AT3G54500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20175792..20178737 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71659.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFDWEEEELT NMIWGDDAET GDHIVPFKVR SEQLNKKEQI EESKTAEQKI TGTKIDLHDK NLGSSSSHNV DEGLPQPDFC MSSWPDTSLT NATKVDQDLS 101: ATELSKCLAE PVRYDSTREK TSELGKGPDI FHSSDESKEQ GDFDDYSWAN IGSFDDLDRM FSNDVPIFGD GSLSGGDELW SSSKDVSNSP KSLSSMLDSQ 201: DLGLDIRTEF EQQENQQFPL TGKANGLSSQ SVPSVRVTLK ADQYREHKGQ PSVEDQPYQQ NKMMKFSKMP GTSEARPFQE LYGQRIPFSN SAGKCVNQLA 301: PPQSSLMAVN LLSESEGSGT SHYSHMPNQY MANSAFGNLA NPYSSVPVIS AVQHPDVRNQ LMHPSYNPAT ATSVNMATDA SARPSTMTPQ EKLEKLRRRQ 401: QMQAMLAIQR QQQQFSHQVP VADQSITQNC LQDIPLQLVD KTNLQGLTAM PSFDPSSSLE QDDSGKFAAA VDNSAEFAVL YRLQDVVAKL DMGTRTCIRD 501: SLFRLAGSAA QRHYTSDTSH SNKTSQDDQE VIPREESRYR YAGMPDTEAV TNPTDRTVAH LLFHRPFDML AAKRMEGPES PASSKMGTEE KGNFPKCSIR 601: ETHLTKQKAQ KEEGPADSLA LGNAPNSGSS STVGERVVEA SQGNKRKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)