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AT3G53830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G55580.1); Has 18457 Blast hits to 6075 proteins in 470 species: Archae - 72; Bacteria - 2471; Metazoa - 6670; Fungi - 820; Plants - 2636; Viruses - 0; Other Eukaryotes - 5788 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:CP002686EnsemblPlants:AT3G53830
EnsemblPlants:AT3G53830.1entrez:824550Gene3D:2.130.10.30GeneID:824550
Gramene:AT3G53830.1hmmpanther:PTHR22870hmmpanther:PTHR22870:SF172InParanoid:F4JBN0
InterPro:IPR000408InterPro:IPR009091KEGG:ath:AT3G53830OMA:ITWGSAD
PaxDb:F4JBN0Pfam:PF00415Pfscan:PS50012PRIDE:F4JBN0
PRINTS:PR00633PROSITE:PS00626PROSITE:PS50012ProteinModelPortal:F4JBN0
Proteomes:UP000006548RefSeq:NP_190951.2scanprosite:PS00626SMR:F4JBN0
STRING:3702.AT3G53830.1SUPFAM:SSF50985TAIR:AT3G53830UniGene:At.22139
UniProt:F4JBN0
Coordinates (TAIR10) chr3:+:19940814..19943592
Molecular Weight (calculated) 49354.00 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.27
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGNIVGKVP IGECKATVVY MSGYLPGAAS EKSPILSPVP VRLSAAVHGG DSWKDVCGGG CGFAMAISEK GKLITWGSTD DEGQSYVASG KHGETPEPFP
101: LPTEAPVVQA SSGWAHCAVV TETGEAFTWG WKECIPSKDP VGKQQSGSSE QGDIASQGSN AASGTTLQNE NQKVGEESVK RRRVSTAKDE TEGHTSGGDF
201: FATTPSLVSV GLGVRITSVA TGGRHTLALS DLGQIWGWGY GGEGQLGLGS RIKMVSSPHL IPCLESIGSG KERSFILHQG GTTTTSAQAS REPGQYIKAI
301: SCGGRHSAAI TDAGGLITFG WGLYGQCGHG NTNDQLRPMA VSEVKSVRME SVAAGLWHTI CISSDGKVYA FGGNQFGQLG TGTDHAEILP RLLDGQNLEG
401: KHAKAVSCGA RHSAVLAEDG QLLCWGWNKY GQLGLGDTND RNIPTQVQLD GCRLRKVACG WWHTLLLGDS PT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)