AT3G53830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G55580.1); Has 18457 Blast hits to 6075 proteins in 470 species: Archae - 72; Bacteria - 2471; Metazoa - 6670; Fungi - 820; Plants - 2636; Viruses - 0; Other Eukaryotes - 5788 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19940814..19943592 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49354.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 472 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGNIVGKVP IGECKATVVY MSGYLPGAAS EKSPILSPVP VRLSAAVHGG DSWKDVCGGG CGFAMAISEK GKLITWGSTD DEGQSYVASG KHGETPEPFP 101: LPTEAPVVQA SSGWAHCAVV TETGEAFTWG WKECIPSKDP VGKQQSGSSE QGDIASQGSN AASGTTLQNE NQKVGEESVK RRRVSTAKDE TEGHTSGGDF 201: FATTPSLVSV GLGVRITSVA TGGRHTLALS DLGQIWGWGY GGEGQLGLGS RIKMVSSPHL IPCLESIGSG KERSFILHQG GTTTTSAQAS REPGQYIKAI 301: SCGGRHSAAI TDAGGLITFG WGLYGQCGHG NTNDQLRPMA VSEVKSVRME SVAAGLWHTI CISSDGKVYA FGGNQFGQLG TGTDHAEILP RLLDGQNLEG 401: KHAKAVSCGA RHSAVLAEDG QLLCWGWNKY GQLGLGDTND RNIPTQVQLD GCRLRKVACG WWHTLLLGDS PT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)