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AT2G44440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Emsy N Terminus (ENT) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Emsy N Terminus (ENT) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G13020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YF3TeggNOG:KOG4675EMBL:AC004521EMBL:AK175816
EMBL:AK176379EMBL:BT029007EMBL:CP002685EnsemblPlants:AT2G44440
EnsemblPlants:AT2G44440.1entrez:819051GeneID:819051Genevisible:Q08A72
GO:GO:0005634GO:GO:0050832Gramene:AT2G44440.1hmmpanther:PTHR33432
HOGENOM:HOG000241095InterPro:IPR005491iPTMnet:Q08A72KEGG:ath:AT2G44440
ncoils:CoilOMA:GDIEWIGPaxDb:Q08A72Pfam:PF03735
Pfam:Q08A72Pfscan:PS51138PhylomeDB:Q08A72PIR:T02399
PRIDE:Q08A72PRO:PR:Q08A72PROSITE:PS51138ProteinModelPortal:Q08A72
Proteomes:UP000006548RefSeq:NP_181972.2SMART:SM01191SMR:Q08A72
STRING:3702.AT2G44440.1SUPFAM:0053920SUPFAM:SSF158639SUPFAM:SSF63748
TAIR:AT2G44440UniGene:At.50138UniProt:Q08A72
Coordinates (TAIR10) chr2:-:18336621..18338950
Molecular Weight (calculated) 47456.50 Da
IEP (calculated) 8.94
GRAVY (calculated) -0.87
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)