AT2G44280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G60070.1); Has 1338 Blast hits to 1325 proteins in 439 species: Archae - 0; Bacteria - 1065; Metazoa - 130; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18301563..18303927 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50951.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.67 | ||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSVIVGME EEEEDPSTKP LGRLSVFYYG VGHMLNDITA SCWFTYLLLF LTQIGLSPRD AAIVMLSGQV ADGFATIFIG ELIDRFGHFK IWHAAGSLLV 101: AISFSSVFGG CLPCSLLHNN SSTIETLSYS MFAAIFNIGW AATQVSHMAM VNCITLNSTS RVALTSSRNA FSMVANLGLY AIALVVFGVS EAVTKENTES 201: QYRWIAYSSI TVGCCFVVIF LMGTKEPRLR INLRETSRAR IPWSYWFRKI LYYQVAMVYL LTRLVLNVSQ AYLAFFVIDD LQMAQSAKAL IPAIIYVCSF 301: VVSVMLQEIP WNGKRLKAYY CAGGIIWIFC GISILLLPRS INSYMYAISV FIGIANAVML VTSISMQSVL IGSKLGGCAF VCGSLSFLDK MSCGLALYVL 401: QSHQGTSPKV DVNIKEYFYF SVTRYGLGLV PAVCSLVGVV VTYFMELDST ILKPLCQPLL LE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)