AT2G40820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.819 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:17036768..17039474 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54437.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 492 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKVCPKTEE KRVVSEAVVE PISADVSFAS NHFPTYKLGP DDQIVDEPDE DDKVPSVKDV VGKETGDLSD QHKKLSVRDL ACKFDKNLAA ASKLVDEAKL 101: NDVTSLEGHV MLKKLRDALE TMRGRMDGRN REAVEKAISM VEALAVKLTQ NEGELIHDKF EVKKLASFLK KASDDAKKLV NQEKSFACAE IESARALVMK 201: LGGAFEEQEL CSKASRDQGP NVEKLVEEVQ EARRIRRLHK PTMVIGMQHE LRDLKSQIQE KSAYSVKLQR EIAIIKKAEG SKSCPYVLDG AQSLGSCLRI 301: RASSDSGIDI SKCSIHWYRA ASESSRREAI SGANRSVYAP EPFDVGRVIQ ADIVSNGQKF TVTTDGPINT AAGLQSRVES LLRKSNSEFT VVISQMNGQD 401: HASRSHVFTV GKARIKLSRG WITKAREIYS TSMQLCGVRG NANVPAKALF WQLRKGLTFL LTFESEQERN AAIVLARTYA YDCNVTLVGP DD |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)