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AT1G54460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3); Has 583 Blast hits to 565 proteins in 94 species: Archae - 0; Bacteria - 3; Metazoa - 163; Fungi - 46; Plants - 315; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
DNASU:841888eggNOG:ENOG410IVXJeggNOG:ENOG4111824EMBL:AC005287
EMBL:AF361626EMBL:AY055093EMBL:AY085262EMBL:CP002684
EnsemblPlants:AT1G54460EnsemblPlants:AT1G54460.1entrez:841888GeneID:841888
GO:GO:0005737GO:GO:0005874Gramene:AT1G54460.1hmmpanther:PTHR31358
hmmpanther:PTHR31358:SF4InterPro:IPR027329KEGG:ath:AT1G54460ncoils:Coil
OMA:EVKGKHCPfam:PF06886PhylomeDB:Q9ASW8PIR:E96586
Proteomes:UP000006548RefSeq:NP_564659.1TAIR:AT1G54460UniGene:At.21561
UniGene:At.67801UniProt:Q9ASW8
Coordinates (TAIR10) chr1:-:20340907..20342900
Molecular Weight (calculated) 37400.60 Da
IEP (calculated) 10.29
GRAVY (calculated) -1.14
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRELVDKHM DKKANSLTAS STGSSDDNKV PSPSTNEAAE VKECTEQNLV ADDARLRQQG ITETPGSHKS SVKPRVTAKT TVPKPFSLSA EKPRRAAVDN
101: NSLGNGASHN SSSASRVSQL NSPLPTRRIP DHKMHHDEED SFSVASSSAT SIRSFKPKIT IGVAPTFSST SRLERRREFY QKLEEKQKAL EAEKRENEKR
201: LKEEQEAVTK QLRKNMAYKA NPVPSFYQEG PPPKQPLKKF PLTRPKSPNL NRRKSCSDTV NASYQEVKGK HCARHRHSVG GCKDEVKTNS VPRTPNSSSK
301: DQMRKSKKGT PKSEEVHEMF NSGHDGETGE NGVGVVEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)