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AT2G40620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 1748 Blast hits to 1720 proteins in 178 species: Archae - 0; Bacteria - 19; Metazoa - 312; Fungi - 66; Plants - 1196; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH4ZeggNOG:ENOG410YGG3EMBL:AC002336EMBL:AY074269
EMBL:AY096746EMBL:CP002685EnsemblPlants:AT2G40620EnsemblPlants:AT2G40620.1
entrez:818657GeneID:818657GO:GO:0003700GO:GO:0043565
Gramene:AT2G40620.1hmmpanther:PTHR13690hmmpanther:PTHR13690:SF82HOGENOM:HOG000239687
IntAct:O22873InterPro:IPR004827KEGG:ath:AT2G40620ncoils:Coil
OMA:IATGEMSPfam:PF00170Pfscan:PS50217PhylomeDB:O22873
PIR:G84831PROSITE:PS50217Proteomes:UP000006548RefSeq:NP_181594.1
SMART:SM00338SMR:O22873STRING:3702.AT2G40620.1SUPFAM:SSF57959
TAIR:AT2G40620UniGene:At.503UniProt:O22873
Coordinates (TAIR10) chr2:-:16954804..16956872
Molecular Weight (calculated) 40669.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.90
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)