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AT2G39560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59350.1); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWU9eggNOG:ENOG410YIGPEMBL:AC004218EMBL:AY075666
EMBL:AY120699EMBL:CP002685EnsemblPlants:AT2G39560EnsemblPlants:AT2G39560.1
entrez:818541GeneID:818541GO:GO:0016021Gramene:AT2G39560.1
hmmpanther:PTHR34054hmmpanther:PTHR34054:SF3HOGENOM:HOG000243929KEGG:ath:AT2G39560
OMA:IENDYGNPfscan:PS51257PhylomeDB:O80643PIR:T00566
Proteomes:UP000006548RefSeq:NP_181488.1TAIR:AT2G39560TMHMM:TMhelix
UniGene:At.37157UniProt:O80643
Coordinates (TAIR10) chr2:-:16505124..16505825
Molecular Weight (calculated) 25809.70 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.24
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLSSVGLA LSIVFGCLLL ALLAELYYLL WCKKRSTTRR PDFRNDYSTP GTRELLFIFC CSSSTNPSSS SPSSSSFSNP KPIDTQQQCP LNNGFENVGG
101: PGLVPRFLFT IMEETVEEME SEDVVSTKGK SLNDLFLNME SGVITPPYLT PRASPSLFTP PLTPLLMESC NGRKEEISSL FESSSDAEFN RLVRSSPLSS
201: SHSPSSSPLS RFKFLRDAEE KLYKKKVMEI AEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)