AT2G38830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.882 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-conjugating enzyme/RWD-like protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-conjugating enzyme/RWD-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process, protein transport; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELCH-like (TAIR:AT5G13860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16225777..16226772 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38133.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 331 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASSSSSSQ VKFIEKALLA TGSFALSYTD PDQKWLIRKH LTSLLQDYPN FELSTDTFNH NNGAKVQLFC LEGSLRIRSS TTQLPTVQLT IWIHENYPLT 101: PPLVFINPNS IPIRNNHPFI NSSGYTKSRY IETWEHPRCN LLDFIRNLKK VLANDHPFLH TDSLIPTRNQ SVSRTEALDR LATSLHYDVL TIMERSEEEI 201: ENLWKLQSEV KQRSESVKSI ITELEIERGT LKVRALKLKE DSDVLTTWVE MNYLKLTSMD MGRIEEMFEI ESEVEGLAGD DAIEDVLRVL EEAAERGELE 301: IGSYLKQVRV LAREQFFLKH LSSFKTQNFH I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)