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AT2G37400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53560.1); Has 2154 Blast hits to 1804 proteins in 477 species: Archae - 203; Bacteria - 1195; Metazoa - 120; Fungi - 25; Plants - 138; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH73eggNOG:ENOG4111WQ2EMBL:AC005896EMBL:BT028932
EMBL:CP002685EnsemblPlants:AT2G37400EnsemblPlants:AT2G37400.1entrez:818316
Gene3D:1.25.40.10GeneID:818316GO:GO:0009536GO:GO:0009941
Gramene:AT2G37400.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF76InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT2G37400ncoils:Coil
OMA:QFEKFRRPfscan:PS50005Pfscan:PS50293PhylomeDB:Q9ZUS6
PIR:C84792PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_565860.1SMR:Q9ZUS6STRING:3702.AT2G37400.1SUPFAM:SSF48452
TAIR:AT2G37400UniGene:At.37429UniProt:Q9ZUS6
Coordinates (TAIR10) chr2:-:15696365..15697366
Molecular Weight (calculated) 38157.90 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.46
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)