AT2G31020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.637 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OSBP(oxysterol binding protein)-related protein 1A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
OSBP(oxysterol binding protein)-related protein 1A (ORP1A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1); Has 2870 Blast hits to 2614 proteins in 228 species: Archae - 2; Bacteria - 10; Metazoa - 1527; Fungi - 710; Plants - 301; Viruses - 8; Other Eukaryotes - 312 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13201668..13204682 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87323.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 760 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYAATPETPF GSARSQPVIT RSVSQRYNHP GQSNHHHLLH SLSFNHQNVL ALPAAAREPP VDVKINDIAG NSIAGILYKW VNYGKGWRPR WFVLQDGVLS 101: YYKIKGPDKI VVIHETEKGS RVIGEESTRM ISRNKRHAAT NNTNHQLRRK PFGEVHLKVS SIRESRSDDK RFSIFTGTKR LHLRAETRED REAWIEALQA 201: VKDMFPRMSN CELMAPTNNL DISIEKLRLR LVEEGVSESA IQDCEQITRS EFSAIQSQLL LLKQKQWLLI DTLRQLETEK VDLENTVVDE TQRQAGNGDS 301: EETISESDDD NEQFDEAEEE MDTCDSLSSS SFKSIGSVFR TSSFSSDDDG LTNGFESEND DVDPSIKTIG FNYPHVKRRK KLPDPVEKEK SVSLWSMIKD 401: NIGKDLTKVC LPVYFNEPLS SLQKCFEDLE YSYLLDQASE WGKRGNNLMR ILNVAAFAVS GYASTEGRIC KPFNPMLGET YEADYPDKGL RFFSEKVSHH 501: PMIVACHCDG TGWKFWGDSN LKSKFWGRSI QLDPIGLLTL QFDDGEIVQW SKVTTSIYNL ILGKLYCDHY GTMKIEGNGE YSCKLKFKEQ SMIDRNPHQV 601: QGIVEDKNGK TVARLFGKWD ESIHYVMVDQ GKVNESHLLW KRNKQPENPT KYNLTRFGIT LNELTPGLKE KLPPTDSRLR PDQRYLEKGE YEMGNAEKLR 701: LEQRQRQARE MQERGWKPKW FRKEKGSETY RYIGGYWEAR DSGSWDDCPD IFGQVHQSIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)