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AT2G28880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : para-aminobenzoate (PABA) synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1997 (emb1997); FUNCTIONS IN: oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Para-aminobenzoate synthase, component I (InterPro:IPR005802), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase 2 (TAIR:AT2G29690.1); Has 26955 Blast hits to 26481 proteins in 3128 species: Archae - 525; Bacteria - 17829; Metazoa - 510; Fungi - 766; Plants - 261; Viruses - 0; Other Eukaryotes - 7064 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT2G28880-MONOMERBioGrid:2787EC:2.6.1.85eggNOG:COG0147
eggNOG:COG0512eggNOG:KOG1224EMBL:AC005727EMBL:AY096797
EMBL:BK001419EMBL:BT002702EMBL:CP002685EnsemblPlants:AT2G28880
EnsemblPlants:AT2G28880.1entrez:817437Gene3D:3.40.50.880Gene3D:3.60.120.10
GeneID:817437Genevisible:Q8LPN3GO:GO:0006541GO:GO:0008153
GO:GO:0009507GO:GO:0016833GO:GO:0046417GO:GO:0046654
GO:GO:0046656GO:GO:0046820Gramene:AT2G28880.1gramene_pathway:2.6.1.85
gramene_pathway:4.1.3.27gramene_pathway:PWY-3742gramene_pathway:TRPSYN-PWYhmmpanther:PTHR11236
hmmpanther:PTHR11236:SF18HOGENOM:HOG000025143InParanoid:Q8LPN3IntAct:Q8LPN3
InterPro:IPR005801InterPro:IPR005802InterPro:IPR006805InterPro:IPR015890
InterPro:IPR017926InterPro:IPR029062iPTMnet:Q8LPN3KEGG:00400+4.1.3.27
KEGG:00790+2.6.1.85KEGG:ath:AT2G28880KO:K13950OMA:ESIATCH
PaxDb:Q8LPN3Pfam:PF00117Pfam:PF00425Pfam:PF04715
Pfam:Q8LPN3Pfscan:PS51273PhylomeDB:Q8LPN3PIR:A84690
PRIDE:Q8LPN3PRO:PR:Q8LPN3PROSITE:PS51273ProteinModelPortal:Q8LPN3
Proteomes:UP000006548RefSeq:NP_850127.1SMR:Q8LPN3STRING:3702.AT2G28880.1
SUPFAM:SSF52317SUPFAM:SSF56322TAIR:AT2G28880tair10-symbols:ADCS
tair10-symbols:emb1997TIGRfam:TIGR00553TIGRFAMs:TIGR00553UniGene:At.38555
unipathway:UPA00035UniPathway:UPA00077UniProt:Q8LPN3
Coordinates (TAIR10) chr2:-:12398937..12403108
Molecular Weight (calculated) 102925.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.35
Length 919 amino acids
Sequence (TAIR10)
(BLAST)
001: MNMNFSFCST SSELSYPSEN VLRFSVASRL FSPKWKKSFI SLPCRSKTTR KVLASSRYVP GKLEDLSVVK KSLPRREPVE KLGFVRTLLI DNYDSYTFNI
101: YQALSTINGV PPVVIRNDEW TWEEAYHYLY EDVAFDNIVI SPGPGSPMCP ADIGICLRLL LECRDIPILG VCLGHQALGY VHGAHVVHAP EPVHGRLSGI
201: EHDGNILFSD IPSGRNSDFK VVRYHSLIID KESLPKELVP IAWTIYDDTG SFSEKNSCVP VNNTGSPLGN GSVIPVSEKL ENRSHWPSSH VNGKQDRHIL
301: MGIMHSSFPH YGLQFHPESI ATTYGSQLFK NFKDITVNYW SRCKSTSLRR RNINDTANMQ VPDATQLLKE LSRTRCTGNG SSYFGNPKSL FSAKTNGVDV
401: FDMVDSSYPK PHTKLLRLKW KKHERLAHKV GGVRNIFMEL FGKNRGNDTF WLDTSSSDKA RGRFSFMGGK GGSLWKQLTF SLSDQSEVTS KHAGHLLIED
501: SQSSTEKQFL EEGFLDFLRK ELSSISYDEK DFEELPFDFC GGYVGCIGYD IKVECGMPIN RHKSNAPDAC FFFADNVVAI DHQLDDVYIL SLYEEGTAET
601: SFLNDTEEKL ISLMGLSTRK LEDQTLPVID SSQSKTSFVP DKSREQYIND VQSCMKYIKD GESYELCLTT QNRRKIGNAD PLGLYLHLRE RNPAPYAAFL
701: NFSNANLSLC SSSPERFLKL DRNGMLEAKP IKGTIARGST PEEDEFLKLQ LKLSEKNQAE NLMIVDLLRN DLGRVCEPGS VHVPNLMDVE SYTTVHTMVS
801: TIRGLKKTDI SPVECVRAAF PGGSMTGAPK LRSVEILDSL ENCSRGLYSG SIGYFSYNGT FDLNIVIRTV IIHEDEASIG AGGAIVALSS PEDEFEEMIL
901: KTRAPANAVM EFCSDQRRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)