suba logo
AT1G48120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydrolases;protein serine/threonine phosphatases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydrolases;protein serine/threonine phosphatases; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine phosphatase 7 (TAIR:AT5G63870.1); Has 7651 Blast hits to 7316 proteins in 444 species: Archae - 82; Bacteria - 281; Metazoa - 2438; Fungi - 1339; Plants - 1824; Viruses - 2; Other Eukaryotes - 1685 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48120-MONOMEREC:3.1.3.16eggNOG:ENOG410IYB0eggNOG:ENOG410YHBV
EMBL:AC023673EMBL:AY064134EMBL:CP002684EnsemblPlants:AT1G48120
EnsemblPlants:AT1G48120.1entrez:841230Gene3D:3.60.21.10GeneID:841230
Genevisible:Q9LNG5GO:GO:0004721GO:GO:0046872Gramene:AT1G48120.1
hmmpanther:PTHR11668hmmpanther:PTHR11668:SF241InParanoid:Q9LNG5InterPro:IPR004843
InterPro:IPR006186InterPro:IPR019557InterPro:IPR029052iPTMnet:Q9LNG5
KEGG:ath:AT1G48120OMA:SHESESCPaxDb:Q9LNG5Pfam:PF00149
Pfam:PF10536Pfam:Q9LNG5PIR:D96521PRIDE:Q9LNG5
PRINTS:PR00114PRO:PR:Q9LNG5ProteinModelPortal:Q9LNG5Proteomes:UP000006548
RefSeq:NP_175246.2SMART:SM00156SMR:Q9LNG5STRING:3702.AT1G48120.1
SUPFAM:SSF56300TAIR:AT1G48120UniGene:At.28763UniProt:Q9LNG5
Coordinates (TAIR10) chr1:-:17774238..17779624
Molecular Weight (calculated) 149462.00 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.45
Length 1340 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVQSLLNFD LDPGPVDQSI LVWQHEHRSA AIWEDEVPPR ELTCRHKLLG MRDWPLDPLV CQKLIEFGLY GVYKVAFIQL DYALITALVE RWRPETHTFH
0101: LPAGEITVTL QDVNILLGLR VDGPAVTGST KYNWADLCED LLGHRPGPKD LHGSHVSLAW LRENFRNLPA DPDEVTLKCH TRAFVLALMS GFLYGDKSKH
0201: DVALTFLPLL RDFDEVAKLS WGSATLALLY RELCRASKRT VSTICGPLVL LQLWAWERLH VGRPGRLKDV GASYMDGIDG PLPDPLGCRW RASLSHKENP
0301: RGGLDFYRDQ FDQQKDEQVI WQPYTPDLLA KIPLICVSGE NIWRTVAPLI CFDVVEWHRP DRVLRQFGLH QTIPAPCDNE KALHAIDKRG KSEYDWSARH
0401: SRHIGLWEAR VSSVVSGEPE CSPMDYNDPY MEWYRRITRR IISPMNERRP GQFLPTGFAF QVLVQRVAAI HARSRASLEE ELTVGSARQT LQDIVDMCAG
0501: ALQLNAPLGS LSNGSVAQAP TPEPFLMLPQ PTPTIIPQKP MGGEMVCLPL NDMEIDDGLA AEPLELMPPV QDIGCEQSLS SVSQKPLFWP SGGKLTFSWV
0601: CEVMLVFDWS SKNLPPCEFS SVLPFNVLDE LVLFASKILK KEPNCVRIDS EKAEVVVVGD LHGQLHDLLY LMQDAGFPDG DRFYVFNGNY VDIGAWGLET
0701: FLLLLSWKVL LPARVYLLRG SHESESCTSM YGFKNEVLTK YGDKGAAVYK KCLECFQLLP LASVIAGKVY TAHGGLFRDV SSFLSDKQER NRKRKRTQKK
0801: QTDNTVLDTE DRSESLPLGS LKDLSKVKRR VIDPPTEGSN LIPGDILWSD PSKDTGLFLN KERGIGLLWG PDCTAKFLQD NNLKWIIRGK GAPDERAKRD
0901: DLAPMNGGYA EDHEGLITLF SAPDHPQFQD TEERHNNKAA YIILQIPECE ELKFQPLEAV SPRPKAEAYY DFRRLIHPPS NLVHNITNSV DSPSSVPDDK
1001: DNLISSENVE YKSMDLSEQM EVDEKDDVDS KYSESITDEV AAFGTPASGD RDMVDFSDKT ENGSKEADHS ETAEISKDLS DTVGKPESCS RTRGTYEAIG
1101: TDAKLKSNTP EAINLEPQPG CDLYVPDSGN STESRTEKAA EEACVGRISI DDCSTTGDAA VELEITYDEK LDRVVTEITG NDAAECMTDG NRDIATDGAE
1201: NLEPSTSKLN YSEPSEDIDD STMKFRHNTS CVADSDLETV NGGVNADCSS SSKCLTSKPV VAHDKFTNLT KPSHDKGYGE SADKPERVIK LVTYSKRKSS
1301: DKKHMIESNE DPQQKVNDSV DSKNKGSLDK SQSVPGDMDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)