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AT2G23000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 10 (scpl10); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 9 (TAIR:AT2G23010.1); Has 3984 Blast hits to 3884 proteins in 449 species: Archae - 0; Bacteria - 475; Metazoa - 640; Fungi - 843; Plants - 1573; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G23000-MONOMERBioCyc:MetaCyc:AT2G23000-MONOMERBioCyc:MetaCyc:MONOMER-18514EC:2.3.1.-
eggNOG:COG2939eggNOG:KOG1282EMBL:AC004401EMBL:AY089099
EMBL:CP002685EnsemblPlants:AT2G23000EnsemblPlants:AT2G23000.1entrez:816831
ESTHER:arath-SCP10Gene3D:3.40.50.1820GeneID:816831Genevisible:O64810
GO:GO:0005576GO:GO:0006508GO:GO:0016747GO:GO:0019748
Gramene:AT2G23000.1hmmpanther:PTHR11802hmmpanther:PTHR11802:SF29HOGENOM:HOG000198297
InParanoid:O64810InterPro:IPR001563InterPro:IPR029058KEGG:ath:AT2G23000
KO:K16296MEROPS:S10.A13OMA:HEKNYRIPANTHER:PTHR11802
PaxDb:O64810Pfam:O64810Pfam:PF00450PhylomeDB:O64810
PIR:D84619PRIDE:O64810PRINTS:PR00724PRO:PR:O64810
ProteinModelPortal:O64810Proteomes:UP000006548RefSeq:NP_179883.1SMR:O64810
STRING:3702.AT2G23000.1SUPFAM:SSF53474TAIR:AT2G23000tair10-symbols:scpl10
UniGene:At.39358UniProt:O64810
Coordinates (TAIR10) chr2:+:9792284..9795741
Molecular Weight (calculated) 49787.30 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.35
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTLKHLLL LLLVLIRHVD SAAIVKSLPG LEGRLPFELE TGYIGIGEEE DIQLFYYFIK SENNPKEDPL LLWLDGGPGC SSLGGLLFEN GPVALKSAVY
101: NGSNPSLFST TYSWTKMANI IYLDQPVGSG FSYSRTPIGK SSDTSEVKRI HEFLQKWLSK HPQFFSNPFY VTGDSYSGMI VPALVQEISK GNYICCKHLI
201: NLQGYVLGNP ITYAEHEKNY RIPFSHGMSL ISDELYESLK RNCKGNYENV DPRNTKCVRL VEEYHKCTDK INTQHILIPD CDKKGHGITS PDCYYYLYFL
301: IECWANNERV REALHVTKGT KGQWQRCNWT IPYDNNIISS VPYHMDNSIN GYRSLIYSGD HDITMPFQAT QAWIKSLNYS IVDDWRPWMI NDQIAGYTRT
401: YSNKMTFATV KGGGHTAEYL PNESSIMFQR WISGQPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)