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AT2G21880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog 7A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog 7A (RAB7A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 26543 Blast hits to 26510 proteins in 728 species: Archae - 26; Bacteria - 127; Metazoa - 13845; Fungi - 3980; Plants - 2847; Viruses - 20; Other Eukaryotes - 5698 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZVeggNOG:KOG0394EMBL:AB071852EMBL:AC007019
EMBL:AK229492EMBL:AY084960EMBL:BT024593EMBL:CP002685
EnsemblPlants:AT2G21880EnsemblPlants:AT2G21880.1entrez:816724Gene3D:3.40.50.300
GeneID:816724Genevisible:Q9SJ11GO:GO:0005525GO:GO:0005622
GO:GO:0005886GO:GO:0007264GO:GO:0015031hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF462HOGENOM:HOG000233968InParanoid:Q9SJ11InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417iPTMnet:Q9SJ11KEGG:ath:AT2G21880
KO:K07976OMA:NDIYPRGPaxDb:Q9SJ11Pfam:PF00071
Pfam:Q9SJ11Pfscan:PS51419PhylomeDB:Q9SJ11PIR:C84606
PRIDE:Q9SJ11PRO:PR:Q9SJ11PROSITE:PS51419ProteinModelPortal:Q9SJ11
Proteomes:UP000006548RefSeq:NP_001118357.1RefSeq:NP_565521.1SMR:Q9SJ11
STRING:3702.AT2G21880.1SUPFAM:SSF52540TAIR:AT2G21880tair10-symbols:ATRAB7A
tair10-symbols:ATRABG2tair10-symbols:RAB7ATIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.14268UniProt:Q9SJ11
Coordinates (TAIR10) chr2:-:9324899..9326170
Molecular Weight (calculated) 23827.00 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.50
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLKNRTLL KVIVLGDSGV GKTSLMNQYV YKKFNKQYKA TIGADFVTKE LHIDEKSVTL QIWDTAGQER FQSLGAAFYR GADCCVLVYD VNNLKSFETL
101: NNWHTEFLKQ ANPMEPETFP FVLIGNKTDV DGGNSRVVSN KRAIEWCGSK GNIPYHETSA KEDTNIDEAF LSVAHIALSN ERKQSNDIYP RGQYHDSVTD
201: IIDPDQSRGC AC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)