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AT2G21540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEC14-like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEC14-like 3 (SFH3); FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: flower development, transport; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G39180.2); Has 2999 Blast hits to 2982 proteins in 239 species: Archae - 0; Bacteria - 1; Metazoa - 974; Fungi - 679; Plants - 897; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC006841EMBL:AC007119
EMBL:AK176420EMBL:AY057587EMBL:CP002685EnsemblPlants:AT2G21540
EnsemblPlants:AT2G21540.1EnsemblPlants:AT2G21540.2entrez:816693ExpressionAtlas:Q93ZE9
Gene3D:3.40.525.10GeneID:816693Genevisible:Q93ZE9GO:GO:0000139
GO:GO:0005215GO:GO:0005886GO:GO:0009908GO:GO:0015031
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF71HOGENOM:HOG000196557InParanoid:Q93ZE9
InterPro:IPR001071InterPro:IPR001251InterPro:IPR011074KEGG:ath:AT2G21540
ncoils:CoilOMA:VDTIMEDPaxDb:Q93ZE9Pfam:PF00650
Pfam:PF03765Pfam:Q93ZE9Pfscan:PS50191PhylomeDB:Q93ZE9
PIR:E84602PRIDE:Q93ZE9PRINTS:PR00180PRO:PR:Q93ZE9
PROSITE:PS50191ProteinModelPortal:Q93ZE9Proteomes:UP000006548RefSeq:NP_001031389.1
RefSeq:NP_565514.1SMART:SM00516SMART:SM01100SMR:Q93ZE9
STRING:3702.AT2G21540.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT2G21540
tair10-symbols:ATSFH3tair10-symbols:SFH3UniGene:At.19824UniGene:At.46763
UniProt:Q93ZE9
Coordinates (TAIR10) chr2:-:9220831..9223737
Molecular Weight (calculated) 62835.70 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.60
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)