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AT1G05810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.578
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A5E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:AC009999EMBL:AF332457
EMBL:AY063847EMBL:BT006190EMBL:CP002684EMBL:M25471
EnsemblPlants:AT1G05810EnsemblPlants:AT1G05810.1entrez:837091Gene3D:3.40.50.300
GeneID:837091Genevisible:P19892GO:GO:0005525GO:GO:0005622
GO:GO:0005886GO:GO:0007264GO:GO:0015031Gramene:AT1G05810.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF394HOGENOM:HOG000233968InParanoid:P19892
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417iPTMnet:P19892
KEGG:ath:AT1G05810PaxDb:P19892Pfam:P19892Pfam:PF00071
Pfscan:PS51419PhylomeDB:P19892PIR:JS0163PRIDE:P19892
PRO:PR:P19892PROSITE:PS51419ProteinModelPortal:P19892Proteomes:UP000006548
RefSeq:NP_563750.2SMR:P19892STRING:3702.AT1G05810.1SUPFAM:SSF52540
TAIR:AT1G05810tair10-symbols:ARAtair10-symbols:ARA-1tair10-symbols:ATRAB11D
tair10-symbols:ATRABA5Etair10-symbols:RABA5ETIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.11934UniProt:P19892
Coordinates (TAIR10) chr1:+:1748314..1749350
Molecular Weight (calculated) 28814.00 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.34
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSCASLLHR LPSPPLSLSL SLQTSPTSLS RNLGKKKKTV KRAMSSDDEG REEYLFKIVV IGDSAVGKSN LLSRYARNEF SANSKATIGV EFQTQSMEIE
101: GKEVKAQIWD TAGQERFRAV TSAYYRGAVG ALVVYDITRR TTFESVGRWL DELKIHSDTT VARMLVGNKC DLENIRAVSV EEGKALAEEE GLFFVETSAL
201: DSTNVKTAFE MVILDIYNNV SRKQLNSDTY KDELTVNRVS LVKDDNSASK QSSGFSCCSS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)