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AT2G19460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3511)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3511); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1); Has 207 Blast hits to 207 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0TJeggNOG:ENOG410Z48YEMBL:AC003058EMBL:AC005917
EMBL:AY034990EMBL:BT015112EMBL:CP002685EnsemblPlants:AT2G19460
EnsemblPlants:AT2G19460.1entrez:816465GeneID:816465Gramene:AT2G19460.1
hmmpanther:PTHR33193hmmpanther:PTHR33193:SF11HOGENOM:HOG000237973InterPro:IPR021899
KEGG:ath:AT2G19460OMA:YSAHRRSPfam:PF12023PhylomeDB:O64580
PIR:T01295Proteomes:UP000006548RefSeq:NP_565454.1STRING:3702.AT2G19460.1
TAIR:AT2G19460UniGene:At.13343UniProt:O64580
Coordinates (TAIR10) chr2:+:8431581..8431931
Molecular Weight (calculated) 13425.50 Da
IEP (calculated) 10.24
GRAVY (calculated) -1.32
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDYRSRSYG DGRTSDLQQY SAHRRSDGPD SFSGNGMQDL RSYSTSYTDY PTRIPEDQNP KKGRSSSSSS WGFVDPDLQR KKRVVSYRAY TVEGKLKGSF
101: RKSFKWIKDK CNKLLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)