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AT2G28260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide-gated channel 15
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide-gated channel 15 (CNGC15); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3177 Blast hits to 3099 proteins in 290 species: Archae - 0; Bacteria - 161; Metazoa - 1483; Fungi - 19; Plants - 962; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AC006202EMBL:CP002685
EnsemblPlants:AT2G28260EnsemblPlants:AT2G28260.1entrez:817372Gene3D:2.60.120.10
GeneID:817372Genevisible:Q9SL29GO:GO:0005249GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391
GO:GO:0071805Gramene:AT2G28260.1hmmpanther:PTHR10217hmmpanther:PTHR10217:SF538
HOGENOM:HOG000238338InParanoid:Q9SL29InterPro:IPR000048InterPro:IPR000595
InterPro:IPR003938InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490
iPTMnet:Q9SL29KEGG:ath:AT2G28260KO:K05391OMA:IRFRTAY
PaxDb:Q9SL29Pfam:PF00027Pfam:PF00520Pfam:Q9SL29
Pfscan:PS50042Pfscan:PS50096PhylomeDB:Q9SL29PIR:G84682
PRIDE:Q9SL29PRINTS:PR01463PRO:PR:Q9SL29PROSITE:PS50042
PROSITE:PS50096ProteinModelPortal:Q9SL29Proteomes:UP000006548Reactome:R-ATH-2485179
Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_180393.1SMART:SM00100
SMR:Q9SL29STRING:3702.AT2G28260.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT2G28260tair10-symbols:ATCNGC15tair10-symbols:CNGC15TMHMM:TMhelix
UniGene:At.52949UniProt:Q9SL29
Coordinates (TAIR10) chr2:+:12049989..12052453
Molecular Weight (calculated) 78727.30 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.07
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYGNSRSVR FQEDQEVVHG GESGVKLKFK INGTQINNVK MMSKGKFLKA KVLSRVFSED LERVKTKILD PRGQTIRRWN KIFLIACLVS LFVDPLFFFL
101: PVMRNEACIT IGVRLEVVLT LIRSLADAFY IAQILIRFRT AYIAPPSRVF GRGELVIDSR KIAWRYLHKS FWIHLVAALP LPQVLIWIII PNLRGSPMTN
201: TKNVLRFIII FQYVPRMFLI FPLSRQIIKA TGVVTETAWA GAAYNLMLYM LASHVLGACW YLLAVERQEA CWRHACNIEK QICQYRFFEC RRLEDPQRNS
301: WFEWSNITTI CKPASKFYEF GIFGDAVTST VTSSKFINKY FYCLWWGLKN LSSLGQNLAT STYAGEILFA IIIATLGLVL FALLIGNMQT YLQSTTMRLE
401: EWRIRRTDTE QWMHHRQLPP ELRQAVRKYD QYKWLATRGV DEEALLISLP LDLRRDIKRH LCFDLVRRVP LFDQMDERML DAICERLKPA LCTEGTFLVR
501: EGDPVNEMLF IIRGHLDSYT TNGGRTGFFN SCLIGPGDFC GEELLTWALD PRPVVILPSS TRTVKAICEV EAFALKAEDL QFVASQFRRL HTKQLRHKFR
601: FYSHQWRTWA ACFIQAAWRR HRKRKYKTEL RAKEEFHYRF EAATARLAVN GGKYTRSGSD SGMMSSIQKP VEPDFSSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)