AT3G57780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3163 Blast hits to 2460 proteins in 357 species: Archae - 16; Bacteria - 291; Metazoa - 841; Fungi - 335; Plants - 248; Viruses - 72; Other Eukaryotes - 1360 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21399766..21402329 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74813.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKGRTTNNS VQSNRSTKNG KRDQKPQKTN GAKRSSEQER LKATKEESNV SVVVDDTTTQ SKLSDDDDHA VNDSSEKTEK EETINGLACD DEDEEEKEES 101: KELDAIAHEK TDSVSSPETC EGVNVDKVVE VWDDASNGGL SGGSENEAGD VKEKNENFEE DEEMLKQMVE TLETRVEKLE EELREVAALE ISLYSVVPDH 201: SSSAHKLHTP ARRISRIYIH ACKHWSQGKR ATVARNSVSG LILAAKSCGN DVSRLTFWLS NIISLREIIL QAFGKTSVPS HFTETSASNG SEHNVLGKVR 301: RKKNQWTKQS NGFKQVFEDW QESQTFTAAL EKVEFWIFSR IVESVWWQVF TPHMQSPENG GKTKEHILGD IEQGSFSISL WKNAFKVTLS RLCPMRGARH 401: ECGCLPILAK MVMEKCIARI DVAMFNAILR ESEHQIPTDP VSDPILDSKV LPILSGNLSF GSGAQLKNAI GNWSRCLAEM FSINTRDSVE ENDPIESEKS 501: FSLLNELSDL LMLPKDMLMD RSTREEVCPS ISLALIKRIL CNFTPDEFCP DDVPGAVLEE LNNESISEQK LSGVSFPYAA SPVSYTPPSS TNVAEVGDIS 601: RMSRNVSMIQ RKGYTSDDEL EELDSPLTSI IENVSLSPIS AQGRNVKQEA EKIGPGVTIS RYELLREVWS M |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)