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AT2G40880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cystatin A
Curator
Summary (TAIR10)
Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).
Computational
Description (TAIR10)
cystatin A (CYSA); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381); BEST Arabidopsis thaliana protein match is: cystatin B (TAIR:AT3G12490.2); Has 756 Blast hits to 733 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 32; Fungi - 0; Plants - 716; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:4022eggNOG:ENOG410JT6SeggNOG:ENOG411084YEMBL:AB044405
EMBL:AC002409EMBL:AY080692EMBL:AY084769EMBL:AY150484
EMBL:CP002685EMBL:Z17618EnsemblPlants:AT2G40880EnsemblPlants:AT2G40880.1
entrez:818685GeneID:818685Genevisible:Q41906GO:GO:0004869
GO:GO:0005576GO:GO:0006952GO:GO:0006972GO:GO:0006979
GO:GO:0009409GO:GO:0009414GO:GO:0010951Gramene:AT2G40880.1
hmmpanther:PTHR11413hmmpanther:PTHR11413:SF56HOGENOM:HOG000238371InParanoid:Q41906
IntAct:Q41906InterPro:IPR000010InterPro:IPR018073InterPro:IPR020381
InterPro:IPR027214KEGG:ath:AT2G40880MEROPS:I25.014OMA:TMYYITL
PANTHER:PTHR11413PaxDb:Q41906Pfam:PF00031Pfam:PF16845
Pfam:Q41906PhylomeDB:Q41906PIR:T00752PRIDE:Q41906
PRO:PR:Q41906ProDom:PD001231PROSITE:PS00287ProteinModelPortal:Q41906
Proteomes:UP000006548RefSeq:NP_181620.1scanprosite:PS00287SMART:SM00043
SMR:Q41906STRING:3702.AT2G40880.1SUPFAM:SSF54403TAIR:AT2G40880
tair10-symbols:ATCYSAtair10-symbols:CYSAtair10-symbols:FL3-27UniGene:At.19895
UniGene:At.24415UniProt:Q41906
Coordinates (TAIR10) chr2:+:17057463..17057930
Molecular Weight (calculated) 14422.40 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.52
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MESKTFWIVT LLLCGTIQLA ICRSEEKSTE KTMMLGGVHD LRGNQNSGEI ESLARFAIQE HNKQQNKILE FKKIVKAREQ VVAGTMYHLT LEAKEGDQTK
101: NFEAKVWVKP WMNFKQLQEF KESSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)