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AT2G21500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G39140.5); Has 279 Blast hits to 254 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 31; Plants - 177; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGZTeggNOG:ENOG410YCNBEMBL:AY093117EMBL:BT008513
EMBL:CP002685EnsemblPlants:AT2G21500EnsemblPlants:AT2G21500.1EnsemblPlants:AT2G21500.2
entrez:816689Gene3D:3.30.40.10GeneID:816689GO:GO:0005886
GO:GO:0008270Gramene:AT2G21500.1Gramene:AT2G21500.2hmmpanther:PTHR31150
hmmpanther:PTHR31150:SF2HOGENOM:HOG000237740InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT2G21500OMA:MAYSRREPfscan:PS50089PhylomeDB:Q8RWF9
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_850013.1RefSeq:NP_850014.1
SMART:SM00184STRING:3702.AT2G21500.1SUPFAM:SSF57850TAIR:AT2G21500
UniGene:At.39561UniProt:Q8RWF9
Coordinates (TAIR10) chr2:-:9207965..9209575
Molecular Weight (calculated) 46687.50 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.69
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNACCVATR DKMVVPNTSA VENFQRNNVR YSPNWSFRWD NRGGRVAGEE TSVSLLSDRI SRNDVSDVKS ETALVSSQGS PLDNFQTQSW QKSPASDQSF
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)