AT2G18876.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Afadin/alpha-actinin-binding protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.3); Has 6400 Blast hits to 5312 proteins in 498 species: Archae - 42; Bacteria - 460; Metazoa - 3301; Fungi - 542; Plants - 222; Viruses - 9; Other Eukaryotes - 1824 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8169683..8172287 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43511.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.06 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA 101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL 201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ 301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)