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AT3G02520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16473966 (2006): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general regulatory factor 7
Curator
Summary (TAIR10)
Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).
Computational
Description (TAIR10)
general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
Protein Annotations
BioGrid:6393eggNOG:COG5040eggNOG:KOG0841EMBL:AC021640
EMBL:AF145299EMBL:AY065274EMBL:AY087723EMBL:AY096526
EMBL:CP002686EMBL:U60445EnsemblPlants:AT3G02520EnsemblPlants:AT3G02520.1
entrez:821060GeneID:821060Genevisible:Q96300GO:GO:0005794
GO:GO:0005886GO:GO:0009506GO:GO:0009507Gramene:AT3G02520.1
hmmpanther:PTHR18860hmmpanther:PTHR18860:SF27HOGENOM:HOG000240379IntAct:Q96300
InterPro:IPR000308InterPro:IPR023409InterPro:IPR023410iPTMnet:Q96300
KEGG:ath:AT3G02520KO:K06630ncoils:CoilOMA:WNSDIND
PANTHER:PTHR18860PaxDb:Q96300Pfam:PF00244Pfam:Q96300
PhylomeDB:Q96300PIRSF:PIRSF000868PRIDE:Q96300PRINTS:PR00305
PRO:PR:Q96300PROSITE:PS00796PROSITE:PS00797ProteinModelPortal:Q96300
Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511RefSeq:NP_566174.1
scanprosite:PS00796scanprosite:PS00797SMART:SM00101SMR:Q96300
STRING:3702.AT3G02520.1SUPFAM:SSF48445TAIR:AT3G02520tair10-symbols:GF14 NU
tair10-symbols:GRF7UniGene:At.21863UniProt:Q96300
Coordinates (TAIR10) chr3:-:526800..527915
Molecular Weight (calculated) 29826.00 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.50
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSREENVY LAKLAEQAER YEEMVEFMEK VAKTVDTDEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNDD HVSIIKDYRG KIETELSKIC
101: DGILNLLDSH LVPTASLAES KVFYLKMKGD YHRYLAEFKT GAERKEAAES TLVAYKSAQD IALADLAPTH PIRLGLALNF SVFYYEILNS PDRACSLAKQ
201: AFDEAISELD TLGEESYKDS TLIMQLLRDN LTLWNSDIND EAGGDEIKEA SKHEPEEGKP AETGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)