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AT3G27460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SGF29 tudor-like domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPFDeggNOG:KOG3038EMBL:AY080609EMBL:AY122985
EMBL:CP002686EnsemblPlants:AT3G27460EnsemblPlants:AT3G27460.1entrez:822367
ExpressionAtlas:Q8RXY6GeneID:822367GO:GO:0005634GO:GO:0009651
Gramene:AT3G27460.1hmmpanther:PTHR21539HOGENOM:HOG000029627InterPro:IPR010750
ncoils:CoilOMA:SMSCILPPfam:PF07039Pfscan:PS51518
PhylomeDB:Q8RXY6PROSITE:PS51518Proteomes:UP000006548RefSeq:NP_189382.2
SMR:Q8RXY6STRING:3702.AT3G27460.1TAIR:AT3G27460UniGene:At.37054
UniProt:Q8RXY6
Coordinates (TAIR10) chr3:-:10159537..10161994
Molecular Weight (calculated) 30501.10 Da
IEP (calculated) 5.07
GRAVY (calculated) -0.73
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSPDIAGI LDNTKELDRL RKEQEEVLVE INKMHKKLQA TPEIVEKPGD ISLSKLKNLY IQAKELSESE VTVSNILLTQ LDSLLPSGPT GQQRRKLEGN
101: EQKRKRMKVD TDVTRVSPSM RNQIEAYASL KGEQVAARVT AEDAEKDEWF VVKVIHFDRE TKEVEVLDEE PGDDEEGGGQ RTYKLSMSCI LPFPKRNDPS
201: STQEFIPGKH VLAVYPGTTA LYKATVISTP RKRKSDEYLL EFDDDEEDGA LPQRTVPFHK VVALPEGHRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)