suba logo
AT2G05642.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF223 (InterPro:IPR003871), Replication factor A, C-terminal (InterPro:IPR013955); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1599eggNOG:KOG0851eggNOG:KOG1787EMBL:CP002685
EnsemblPlants:AT2G05642EnsemblPlants:AT2G05642.1entrez:819430Gene3D:2.40.50.140
GeneID:819430Gramene:AT2G05642.1hmmpanther:PTHR23273hmmpanther:PTHR23273:SF16
InParanoid:F4IHC4InterPro:IPR003871InterPro:IPR012340InterPro:IPR013955
KEGG:ath:AT2G05642OMA:EITEFKEPaxDb:F4IHC4Pfam:PF02721
Pfam:PF08646ProteinModelPortal:F4IHC4Proteomes:UP000006548RefSeq:NP_850486.2
STRING:3702.AT2G05642.1SUPFAM:SSF50249TAIR:AT2G05642UniGene:At.47091
UniProt:F4IHC4
Coordinates (TAIR10) chr2:-:2098253..2100867
Molecular Weight (calculated) 60229.70 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.40
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLEITPVSQ LHSHLSTCKV KVRIARLWAY HKKDRPKDIM GIDLLLVDDK GERIQASIRS QLLSKFQEKL EEGDCYMIMN FEISDNGGSY RASSHPYKIN
101: FMSMTHIIGM QELKEVNVSG RQTKLLNLQL RDLGESVIDV TLWEKWAEDL YSYVKGYKDG SIVLVGSLMK IKTYFKNVYL TFTIRDSLIW FLIFSRQDLC
201: PKSSFSTKLF INSSIAEITE FKESLAKSDC LALTTISTIT SSSSSKHSKP SFSLRDQKTI ADINSGGACN IIASIFSIDT KVPWFYIGCN ICFKKVSPYF
301: NPETEEIEAG KYECEKCDTF VTTTSTRFRV QVTVLDHTGE ASFLLFDQDV IKLIHKSAYE LLEQQVQFNR SDKIPQELLD LEGRQFVFTI QGSDSTKFSR
401: PSIFRVYELT DKPEIVQKFQ ENLLQMNTTD PNTHMVSSFS NSTTSETEPD SDMNIVSTPS NATTNQIDTE SSEAANYENS NSSIKTSKNT SKITKLTPTS
501: KRALTSSKDN AAQKSSTKPK LLSKAEIKKE KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)