suba logo
AT1G55970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone acetyltransferase of the CBP family 4
Curator
Summary (TAIR10)
HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.
Computational
Description (TAIR10)
histone acetyltransferase of the CBP family 4 (HAC4); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 5 (TAIR:AT3G12980.1); Has 778 Blast hits to 575 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 19; Plants - 254; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G55970-MONOMEREC:2.3.1.48eggNOG:COG5076eggNOG:KOG1778
EMBL:AC002304EMBL:AC009894EMBL:AF389513EMBL:AF512559
EMBL:AF512560EMBL:CP002684EnsemblPlants:AT1G55970EnsemblPlants:AT1G55970.1
entrez:842048Gene3D:1.20.1020.10Gene3D:3.30.40.10GeneID:842048
Genevisible:Q9LG11GO:GO:0003712GO:GO:0004402GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270Gramene:AT1G55970.1
hmmpanther:PTHR13808InParanoid:Q9LG11InterPro:IPR000197InterPro:IPR000433
InterPro:IPR011011InterPro:IPR013083InterPro:IPR013178InterPro:IPR019786
InterPro:IPR019787InterPro:IPR031162KEGG:ath:AT1G55970KO:K04498
ncoils:CoilPaxDb:Q9LG11Pfam:PF00569Pfam:PF00628
Pfam:PF02135Pfam:PF08214Pfam:Q9LG11Pfscan:PS50134
Pfscan:PS50135Pfscan:PS51727PhylomeDB:Q9LG11PRO:PR:Q9LG11
PROSITE:PS01357PROSITE:PS01359PROSITE:PS50134PROSITE:PS50135
PROSITE:PS51727Proteomes:UP000006548Reactome:R-ATH-3371568Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_564706.1scanprosite:PS01357
scanprosite:PS01359SMART:SM00291SMART:SM00551SMART:SM01250
STRING:3702.AT1G55970.1SUPFAM:SSF57850SUPFAM:SSF57903SUPFAM:SSF57933
TAIR:AT1G55970tair10-symbols:HAC04tair10-symbols:HAC4tair10-symbols:HAC6
tair10-symbols:HAG04tair10-symbols:HAG4UniGene:At.26162UniProt:Q9LG11
Coordinates (TAIR10) chr1:-:20932451..20938290
Molecular Weight (calculated) 165079.00 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.57
Length 1456 amino acids
Sequence (TAIR10)
(BLAST)
0001: MNNNKEVPQN SVAVSSSSSA PITVISPQQD ANNFIKKRRT ALRNRIYAIV RHKQKQHQIF LDKKNQQQQQ RVDDATQRAL LEKQDQQCIA ATRMIEEELL
0101: KSSRSFEEYF DLRTFDARVR TILQQLGTML SQRRAAAAAM NNGEAQCITS TRAVHTSISV SNSFQCGRSL VPINCTTATA GAFSIGPDMQ THHSTGANHQ
0201: MVEVNRPNMN QITCGISSPL ITGFNGNCVP VSANIPMTSQ DLFNATHFST LPQPFLQPPP DQSHMHRYSM SNVASFGQSN PYPCGVVMSS GSMAVAQNSI
0301: PWNNPNPMQG LDPTVTSYHS NLQPMQQTPL PKRQLHHPLW NTNFQSAPNN RDNLPQVSQQ LSNHGSRQHR GQHSQNLYPG QLQNQDRLLP NLTQQAMALA
0401: APVMHVPSKQ VNEDCGQTSS NTVLRWIPFM FHARHCKAKK DKCASKFCFQ ARKIVKHIDC CKVPNCKYRY CLGTRMWLDH FKQCKSISCR TCVAVREYME
0501: KNKYTIVPLR RAKCSSASSK CQPKKSSKSR QAYKKGGAEA PSVDADLQRS IKRPKLHRPS QNITPETKSI SVTGCGVVCK PHSLMNMQEK DGLQSLKVEA
0601: MPMDIDVPGA SEIPVTRELV KHVAEDTPKG NNCGGFAMVE KTSCLLAQGK SKCMNEMSAP KEENVKQSVE VVDASKMEIS SLVELFTPEQ VKEHIRSLRQ
0701: WVGQSKTKAE KNKAMGCSMS VNSCQLCAVE WLVFEPVPIY CSPCGIRIKK NALHYSIAVG ESRHYVCAPC YNEAREKLVF LDGTSIPKTR LQKKKNDEQV
0801: PEGWVQCDKC EAWQHIICAL FNSRRNHGES TKYTCPSCYI QEVEQRERRP LPLSAVPGAT SLPVTSLSKH LEERLFKKLK EERQERARLQ GKTYEEVPGA
0901: ESLTVRVVAS VDKVLEVKER FLELFREENY PSEFPYKSKA IFLFQKIENV EVCLFGMFVQ EFGTDSGPPN ERRTFRTVSG EALRTFVYHE ILIGYLDYCK
1001: KRGFTSCYIW ACPPLKGDDY ILYCHPEIQK TPKTDKLREW YLAMLRKASK EDVVVECTNL YNHFFVQSGE CRANVTAARL PYFDGDYWPS AAEDLLRQMN
1101: QEDDGETKLH RKGLTKKVIS KRALKAVGQL DLSLNASKDR LMMQKLGETI CPMKEDFIMV HLQHCCKHCT TLMVSGNRWV CNHCKNFQIC DKCYEVEQNR
1201: INIERHPINQ KEKHALFPVA IKDVPTKIED KDNNLESEFF HNRQAFLNLC QGNNYQYETL RRAKHSSMMI LYHLHNPTAP AFATVCTICQ QEVENSQGWH
1301: CEVCPGYDVC SACYSKDSIN HSHKLTSRSS STDSTVVQQN GQASQSYQVK LEKLKKLLVH AATCRSTQCQ YQGCRKSKML FRHCIDCTTG DCPICKGLWS
1401: LLKLHARNCR DSKCTVPKCS GLRAISRRKQ QQADKRRRAA VMEMMRERAA EATRTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)