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AT2G01870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP56eggNOG:ENOG410ZHBEEMBL:AC007069EMBL:AK175254
EMBL:BT025731EMBL:CP002685EnsemblPlants:AT2G01870EnsemblPlants:AT2G01870.1
entrez:814718GeneID:814718GO:GO:0009507GO:GO:0009535
GO:GO:0016021Gramene:AT2G01870.1hmmpanther:PTHR37716hmmpanther:PTHR37716:SF1
KEGG:ath:AT2G01870ncoils:CoilPhylomeDB:Q9SIS7PIR:B84430
Proteomes:UP000006548RefSeq:NP_565278.1STRING:3702.AT2G01870.1TAIR:AT2G01870
TMHMM:TMhelixUniGene:At.42461UniGene:At.71241UniProt:Q9SIS7
Coordinates (TAIR10) chr2:-:389846..390319
Molecular Weight (calculated) 17904.50 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.34
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVVLGLQSL KWYTHGRIME TKKKRHLMRI VQATEREDSF QIDRDKAREA LKQLDQQIES QADEKPRIIN KTSSDVVRTN NDPIMFEEPP EISGSFLTSS
101: AFVLLALTLF YNILFITVIK PSMDGPESVP EENSVAMSDS DIVKFPLSSL PENTFKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)