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AT1G80850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G80850-MONOMEReggNOG:COG2818eggNOG:ENOG410IIKVEMBL:AC011713
EMBL:BT033081EMBL:CP002684EnsemblPlants:AT1G80850EnsemblPlants:AT1G80850.1
entrez:844424Gene3D:1.10.340.30GeneID:844424GO:GO:0006284
GO:GO:0008725Gramene:AT1G80850.1hmmpanther:PTHR31116hmmpanther:PTHR31116:SF1
HOGENOM:HOG000220754InterPro:IPR005019InterPro:IPR011257KEGG:ath:AT1G80850
KO:K01246OMA:ENANQVCPfam:PF03352PhylomeDB:Q9SAH6
PIR:B96841Proteomes:UP000006548RefSeq:NP_178200.1SMR:Q9SAH6
STRING:3702.AT1G80850.1SUPFAM:SSF48150TAIR:AT1G80850UniGene:At.28188
UniGene:At.50058UniProt:Q9SAH6
Coordinates (TAIR10) chr1:-:30385607..30387272
Molecular Weight (calculated) 36738.80 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.52
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAPPRVRSV DSSDREFRSV LGPAGNKLQQ KPLSKPVKKP VAEKTKNLTF TEKMPQCSPL SPPILRRNGI SMTASYSSDA SSSCESSPLS MTSTSSGKRV
101: LRRSGSVSSS SSLRRNLTEE RDEKASDCFC DGRKRCAWIT PKSDQCYIAF HDEEWGVPVH DDKRLFELLS LSGALAELSW KDILSKRQLF REVFMDFDPI
201: AISELTNKKI TSPEIAATTL LSEQKLRSIL ENANQVCKII GAFGSFDKYI WNFVNQKPTQ SQFRYPRQVP VKTSKAELIS KDLVRRGFRS VSPTVIYSFM
301: QTAGLTNDHL TCCFRHHDCM TKDETGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)