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AT1G79050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : recA DNA recombination family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0468eggNOG:KOG1433EMBL:AC002986EMBL:AY050885
EMBL:AY113960EMBL:CP002684EMBL:L15229EMBL:M98039
EnsemblPlants:AT1G79050EnsemblPlants:AT1G79050.1entrez:844246ExpressionAtlas:Q39199
Gene3D:3.30.250.10Gene3D:3.40.50.300GeneID:844246Genevisible:Q39199
GO:GO:0000150GO:GO:0000400GO:GO:0000730GO:GO:0003690
GO:GO:0003697GO:GO:0005524GO:GO:0006312GO:GO:0006974
GO:GO:0008094GO:GO:0009570GO:GO:0010212GO:GO:0042148
HAMAP:MF_00268hmmpanther:PTHR22942hmmpanther:PTHR22942:SF37InParanoid:Q39199
InterPro:IPR003593InterPro:IPR013765InterPro:IPR020584InterPro:IPR020587
InterPro:IPR020588InterPro:IPR023400InterPro:IPR027417iPTMnet:Q39199
OMA:HMSLLAFPaxDb:Q39199Pfam:PF00154Pfam:Q39199
Pfscan:PS50162Pfscan:PS50163PhylomeDB:Q39199PIR:A46259
PIR:T01050PRIDE:Q39199PRINTS:PR00142PRO:PR:Q39199
PROSITE:PS00321PROSITE:PS50162PROSITE:PS50163ProteinModelPortal:Q39199
Proteomes:UP000006548RefSeq:NP_565198.1scanprosite:PS00321SMART:SM00382
SMR:Q39199STRING:3702.AT1G79050.1SUPFAM:SSF52540SUPFAM:SSF54752
TAIR:AT1G79050TIGRfam:TIGR02012TIGRFAMs:TIGR02012UniGene:At.23809
UniGene:At.317UniProt:Q39199
Coordinates (TAIR10) chr1:-:29737084..29740140
Molecular Weight (calculated) 47736.10 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.22
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSQLVLSLK LNPSFTPLSP LFPFTPCSSF SPSLRFSSCY SRRLYSPVTV YAAKKLSHKI SSEFDDRING ALSPDADSRF LDRQKALEAA MNDINSSFGK
101: GSVTRLGSAG GALVETFSSG ILTLDLALGG GLPKGRVVEI YGPESSGKTT LALHAIAEVQ KLGGNAMLVD AEHAFDPAYS KALGVDVENL IVCQPDNGEM
201: ALETADRMCR SGAVDLICVD SVSALTPRAE IEGEIGMQQM GLQARLMSQA LRKMSGNASK AGCTLIFLNQ IRYKIGVYYG NPEVTSGGIA LKFFASVRLE
301: IRSAGKIKSS KGDEDIGLRA RVRVQKSKVS RPYKQAEFEI MFGEGVSKLG CVLDCAEIME VVVKKGSWYS YEDQRLGQGR EKALQHLREN PALQDEIEKK
401: VRLLMLDGEV HRSTPLMSSS SSSASHREEE EEDSLDDFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)