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AT4G20010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid transcriptionally active 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: organellar single-stranded DNA binding protein 3 (TAIR:AT5G44785.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVZTeggNOG:ENOG410YJP5EMBL:AK118242EMBL:AL021637
EMBL:AL161552EMBL:BT026461EMBL:CP002687EnsemblPlants:AT4G20010
EnsemblPlants:AT4G20010.1entrez:827746Gene3D:2.40.50.140GeneID:827746
Genevisible:Q8GXH3GO:GO:0003697GO:GO:0006260GO:GO:0009295
GO:GO:0009507GO:GO:0009508hmmpanther:PTHR10302hmmpanther:PTHR10302:SF8
HOGENOM:HOG000114724InParanoid:Q8GXH3InterPro:IPR000424InterPro:IPR011344
InterPro:IPR012340KEGG:ath:AT4G20010OMA:WDHRENKPANTHER:PTHR10302
PaxDb:Q8GXH3Pfam:Q8GXH3Pfscan:PS50935PhylomeDB:Q8GXH3
PIR:T04885PRIDE:Q8GXH3PRO:PR:Q8GXH3PROSITE:PS50935
ProteinModelPortal:Q8GXH3Proteomes:UP000006548RefSeq:NP_001031674.1RefSeq:NP_567593.1
STRING:3702.AT4G20010.1SUPFAM:SSF50249TAIR:AT4G20010tair10-symbols:OSB2
tair10-symbols:PTAC9UniGene:At.1899UniProt:Q8GXH3
Coordinates (TAIR10) chr4:+:10842128..10843989
Molecular Weight (calculated) 41731.50 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.56
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLISKSLAR IECSPFFYPR ASEITTGKRI TSPQIRLYTA AAVGGKTGNG ERKQRAKAPA KTPEAVTPVK PLEIASVTAT TENELPRPNE IAYESEVANW
101: VNLIGFVDQP VQFEASSDGK FWAGTVISQR SASDSSGFWI PIIFEGDLAK TAARYVSKDD QIHVSGKLFI DSPPPNMTYA QANVQVLVQN LNFIQPMSPS
201: PSPFMVMSSS EKEESGIKKQ PARAKQDIVI DEASDSWNHL IENPKEWWDH RENKVNGLVK PRHPDFKSKD SSFSLWLNKA PNWVLPKLEG LEFDVLVPKA
301: RVVKQLKGEE SWKDLVQNPD KWWDNRIDKR NAKAPDFKHK ETGEALWLNE SPTWVLPKLP PVKKKQESIV F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)