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AT1G77460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.829
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 membrane targeting protein (InterPro:IPR018029), Armadillo (InterPro:IPR000225), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:CP002684EnsemblPlants:AT1G77460
EnsemblPlants:AT1G77460.1EnsemblPlants:AT1G77460.2entrez:844082Gene3D:1.25.10.10
Gene3D:2.60.40.150GeneID:844082GO:GO:0005886GO:GO:0009826
GO:GO:0052324Gramene:AT1G77460.1Gramene:AT1G77460.2hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF135InterPro:IPR000008InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT1G77460OMA:PSKECMQPfam:PF00168
Pfam:PF00514Pfscan:PS50004Pfscan:PS50176PROSITE:PS50004
PROSITE:PS50176Proteomes:UP000006548RefSeq:NP_001185419.1RefSeq:NP_177870.2
SMART:SM00185SMART:SM00239STRING:3702.AT1G77460.1SUPFAM:SSF48371
SUPFAM:SSF49562TAIR:AT1G77460UniGene:At.34473UniProt:F4I718
Coordinates (TAIR10) chr1:+:29104378..29111580
Molecular Weight (calculated) 231446.00 Da
IEP (calculated) 5.28
GRAVY (calculated) 0.15
Length 2136 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLKAFLPGTQ EEETLSSLQS GKVDAKMEMD DPEKAMATVA QLIEQLHAKT SSPQDKELTT ARLLGIAKGK REARRLIGSY GQAMPLFISM LRNGTTLAKV
0101: NVASILCVLC KDKDLRLKVL LGGCIPPLLS VLKSGTMETR KAAAEAIYEV SSAGISNDHI GMKIFITEGV VPTLWDQLSL KGNQDKVVEG YVTGALRNLC
0201: GVDDGYWRLT LEGSGVDIVV SLLSSDNPNS QANAASLLAR LVLSFCDSIQ KILNSGVVKS LIQLLEQKND INVRASAADA LEALSANSDE AKKCVKDAGG
0301: VHALIEAIVA PSKECMQGKH GQSLQEHATG ALANVFGGMR HLIIYLGQVS QSPRLTEPIG DVIGALAYAL MIFKQPESSE NIFDPSVIES ILVKLLKPRD
0401: TKLIQERILE AMASLYGNSS LSCYLDDAEA KRVLIALITM ASADVRERLI ICLSGLCHDK VGIWEAIGKR EGIQLFISFL GLSSEQHQEY AVEMLKILTA
0501: QVDDSKWAVT AAGGIPPLVQ LLETGSQKAK EDAACILWNL CCHSEEIRDC VERAGGIPAF LWLLKTGGPN SQETSAKTLV KLVHTADPAT INQLLALLLG
0601: DDPTSKIQVI EVLGHVLSKA SQEDLVHRGC AANKGLRSLV ESLTSSREET KEHTASVLAD LFSSRQDICG HLATDDIINP WIKLLTNNTQ NVAKQVARAL
0701: DALSRPVKNN NNKKKSYIAE GDIKSLIKLA KNSSIESAEN AVSALANLLS DPDIAAEALA EDVVSAFTRI LADGSPEGKR NASRALHQLL KNFPVCDVLK
0801: GSAQCRFAIL SLVDSLKSID VDSADAFNIL EVVALLAKTK SGVNFSYPPW IALAEVPSSL ETLVQCLAEG HTLVQDKAIE VLSRLCSDQQ FLLSELIVSR
0901: PKSMLVLADR IVNASSLEVR VGSTALLLCA AKEKKQLITE TLDQSGFLKL LLHALVDMIK HNSTSFSLET EVQTPKGFLE KNVFQDTGSF YFPDPAKILG
1001: GTVALWLLCI LTSVDAKSKV IVMEAGGLEV LVGKLARYTS SAQAEFEDTE GIWISALLLA IMFQDDNVSF SSTTMRIIPT LAVLLGSDEL IDRYFAAHAM
1101: ASLVCTRNRG INLTIANSGA VSGIINLLGY VESEILNLVA LANEFSLVKE PDQVILQHLF EIEDVRLGST ARKSIPLLVD LLRPIPDRPG APQFAVQILI
1201: RIADGSDTNK LLMAEAGAVE ALTKYLSLSP QDSTEYAISE LLRVLFSNHE LRQNEMALSS LNQLIAVLRL GSRSARYSAA GALNELFDAE NIRNSEIACQ
1301: AVQPLMDILG SVSESEQEVA LSALIKLSSG NTSNTALLID VEGSLLENVI KILSSATASE ELKINAARLC SVVFSNKNIR TSASASGCMK PLITLMQSER
1401: SAAVEAAVFA IKILLDDEQH LELAAAHNIQ ELLVGLVSGK NYVIIEASLS ALIKLGKDRV PRKLDMVEAG IIERCLELLP GASSSLCSAV VELFRILTNS
1501: GVIARRPDVA KTVEPLFAVL LRSDLTLWGQ HSALQALVNI LEKQQTLEAF SFTPSEAIVP LISFLESSSQ AIQQLGAELL SHFLTMEDFQ QDITTQSAVV
1601: PLVRLAGIGI LSLQETAIKA LEKISASWPK AVLDAEGIFE LSKVILQEDP QPPLDLWESA AFVLSNILQY DAECFFRVEL PVLVKLLFST IESTVLLALK
1701: ALMLHEKNDA SSTVQMAELG AIDALLDLLR SHQCEEESGS LLEVIFNNPR VRELKLCKYA IAPLSQYLLD PHTRSEPGRL LAALALGDLS QHEGLSRSSG
1801: SVSACRALIS VLEEQPTEEM KVVAICALQN FVMNSRTNRR AVAEAGGVLL IQELLLSCNP EVSGQAALMV KFLFSNHTLQ EYVSNELIRS LTAALERGLW
1901: STATINIEVL RTLNVIFSNF PKLRASEAAT FCIPHLVGAL KSGVEDVQGL VLDILYLLRH SWTNMSIDVA KSQAMIAAEA IPVLQMLMKT CPPRFHDKAD
2001: SLLHCLPGCL TVNVMRANNL KQSMATTNAF CQLTIGNCPP RQTKVVSNST TPEWKEGFTW AFDVPPKGQK LHIICKSKST FGKTTLGRVT IQIDKVVTEG
2101: EYSGSLSLNH ENSKDASSRS LDIEIAWSNR TTDETH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)