AT1G75110.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.404 plasma membrane 0.240 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferase family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
REDUCED RESIDUAL ARABINOSE 2 (RRA2); LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G19360.1); Has 313 Blast hits to 307 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:28194348..28195885 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48171.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGRRDRIQQ LRGSRIAIAI FVGILIGCVC SVLFPNGFFN SGSSLIANEE RISKSTSTDG LASCESSERV KMLKSDFSII SVKNAELRKQ VRELTEKVRL 101: AEQETENARK QVLVLGSEIK AGPFGTVKSL RTNPTVVPDE SVNPRLAKLL EKVAVNKEII VVLANSNVKP MLELQIASVK RVGIQNYLIV ALDDSMESFC 201: ESKEVVFYKR DPDKAVDMVG KSGGNHAVSG LKFRVLREFL QLGYSVLLSD VDIVFLQNPF SHLHRDSDVE SMSDGHDNNT AYGFNDVFDE PSMGWARYAH 301: TMRIWVFNSG FFYLRPTIPS IDLLDRVADT LSKSEAWDQA VFNEQLFYPS HPGYTGLHAS KRVMDMYEFM NSKVLFKTVR KNQELKKLKP VIVHLNYHPD 401: KLERMHAVVE FYVNGKQDAL DSFPDGSD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)