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AT1G75110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.404
plasma membrane 0.240
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
REDUCED RESIDUAL ARABINOSE 2 (RRA2); LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G19360.1); Has 313 Blast hits to 307 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
CAZy:GT77EC:2.4.2.-eggNOG:ENOG410IFY8eggNOG:ENOG410YBEW
EMBL:AC013258EMBL:AY039531EMBL:AY086542EMBL:AY102148
EMBL:CP002684EMBL:KJ138932EnsemblPlants:AT1G75110EnsemblPlants:AT1G75110.1
entrez:843848GeneID:843848Genevisible:Q9C9Q5GO:GO:0000139
GO:GO:0016021GO:GO:0016757GO:GO:0071555GO:GO:0080147
Gramene:AT1G75110.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF3IntAct:Q9C9Q5
InterPro:IPR005069InterPro:IPR029044KEGG:ath:AT1G75110ncoils:Coil
OMA:FCESKEVPaxDb:Q9C9Q5Pfam:PF03407Pfscan:PS51257
PhylomeDB:Q9C9Q5PIR:B96781ProteinModelPortal:Q9C9Q5Proteomes:UP000006548
RefSeq:NP_565102.1STRING:3702.AT1G75110.1SUPFAM:SSF53448TAIR:AT1G75110
tair10-symbols:RRA2TMHMM:TMhelixUniGene:At.17941UniProt:Q9C9Q5
Coordinates (TAIR10) chr1:-:28194348..28195885
Molecular Weight (calculated) 48171.90 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.22
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRRDRIQQ LRGSRIAIAI FVGILIGCVC SVLFPNGFFN SGSSLIANEE RISKSTSTDG LASCESSERV KMLKSDFSII SVKNAELRKQ VRELTEKVRL
101: AEQETENARK QVLVLGSEIK AGPFGTVKSL RTNPTVVPDE SVNPRLAKLL EKVAVNKEII VVLANSNVKP MLELQIASVK RVGIQNYLIV ALDDSMESFC
201: ESKEVVFYKR DPDKAVDMVG KSGGNHAVSG LKFRVLREFL QLGYSVLLSD VDIVFLQNPF SHLHRDSDVE SMSDGHDNNT AYGFNDVFDE PSMGWARYAH
301: TMRIWVFNSG FFYLRPTIPS IDLLDRVADT LSKSEAWDQA VFNEQLFYPS HPGYTGLHAS KRVMDMYEFM NSKVLFKTVR KNQELKKLKP VIVHLNYHPD
401: KLERMHAVVE FYVNGKQDAL DSFPDGSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)