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AT1G75040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pathogenesis-related gene 5
Curator
Summary (TAIR10)
Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.
Computational
Description (TAIR10)
pathogenesis-related gene 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1613 Blast hits to 1588 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 84; Plants - 1422; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXYGeggNOG:ENOG4111KEVEMBL:AC013258EMBL:AY035168
EMBL:AY059114EMBL:CP002684EMBL:L78079EMBL:M90510
EnsemblPlants:AT1G75040EnsemblPlants:AT1G75040.1entrez:843842Gene3D:2.60.110.10
GeneID:843842Genevisible:P28493GO:GO:0005618GO:GO:0005773
GO:GO:0009615GO:GO:0009627GO:GO:0010224GO:GO:0031540
GO:GO:0046686GO:GO:0048046Gramene:AT1G75040.1hmmpanther:PTHR31048
hmmpanther:PTHR31048:SF10HOGENOM:HOG000238454InParanoid:P28493IntAct:P28493
InterPro:IPR001938InterPro:IPR017949KEGG:ath:AT1G75040OMA:RIFKNAC
PANTHER:PTHR31048PaxDb:P28493Pfam:P28493Pfam:PF00314
Pfscan:PS51367PhylomeDB:P28493PIR:JQ1695PIRSF:PIRSF002703
PRIDE:P28493PRINTS:PR00347PRO:PR:P28493PROSITE:PS00316
PROSITE:PS51367ProteinModelPortal:P28493Proteomes:UP000006548RefSeq:NP_177641.1
scanprosite:PS00316SMART:SM00205SMR:P28493STRING:3702.AT1G75040.1
SUPFAM:SSF49870TAIR:AT1G75040tair10-symbols:PR-5tair10-symbols:PR5
TMHMM:TMhelixUniGene:At.322UniGene:At.67351UniProt:P28493
Coordinates (TAIR10) chr1:+:28177754..28178731
Molecular Weight (calculated) 25253.60 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.13
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MANISSIHIL FLVFITSGIA VMATDFTLRN NCPTTVWAGT LAGQGPKLGD GGFELTPGAS RQLTAPAGWS GRFWARTGCN FDASGNGRCV TGDCGGLRCN
101: GGGVPPVTLA EFTLVGDGGK DFYDVSLVDG YNVKLGIRPS GGSGDCKYAG CVSDLNAACP DMLKVMDQNN VVACKSACER FNTDQYCCRG ANDKPETCPP
201: TDYSRIFKNA CPDAYSYAYD DETSTFTCTG ANYEITFCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)