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AT1G73360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeodomain GLABROUS 11
Curator
Summary (TAIR10)
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.
Computational
Description (TAIR10)
homeodomain GLABROUS 11 (HDG11); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 12 (TAIR:AT1G17920.1); Has 12070 Blast hits to 11936 proteins in 534 species: Archae - 0; Bacteria - 0; Metazoa - 9179; Fungi - 319; Plants - 2364; Viruses - 8; Other Eukaryotes - 200 (source: NCBI BLink).
Protein Annotations
BioGrid:28890eggNOG:ENOG410ISCTeggNOG:ENOG410YFS8EMBL:AC012396
EMBL:BT003979EMBL:BT004915EMBL:CP002684EnsemblPlants:AT1G73360
EnsemblPlants:AT1G73360.1entrez:843671Gene3D:1.10.10.60Gene3D:3.30.530.20
GeneID:843671Genevisible:Q9FX31GO:GO:0000976GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0008289GO:GO:0009828
GO:GO:0010091Gramene:AT1G73360.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF236
HOGENOM:HOG000243256InParanoid:Q9FX31IntAct:Q9FX31InterPro:IPR001356
InterPro:IPR002913InterPro:IPR009057InterPro:IPR017970InterPro:IPR023393
KEGG:ath:AT1G73360KO:K09338ncoils:CoilOMA:QRACERY
PaxDb:Q9FX31Pfam:PF00046Pfam:PF01852Pfam:Q9FX31
Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q9FX31PIR:B96760
PRIDE:Q9FX31PRO:PR:Q9FX31PROSITE:PS00027PROSITE:PS50071
PROSITE:PS50848ProteinModelPortal:Q9FX31Proteomes:UP000006548RefSeq:NP_177479.1
scanprosite:PS00027SMART:SM00234SMART:SM00389SMR:Q9FX31
STRING:3702.AT1G73360.1SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT1G73360
tair10-symbols:ATHDG11tair10-symbols:EDT1tair10-symbols:HDG11UniGene:At.34997
UniProt:Q9FX31
Coordinates (TAIR10) chr1:-:27578893..27581820
Molecular Weight (calculated) 79124.70 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.35
Length 722 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)