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AT1G17920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeodomain GLABROUS 12
Curator
Summary (TAIR10)
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.
Computational
Description (TAIR10)
homeodomain GLABROUS 12 (HDG12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 11 (TAIR:AT1G73360.1); Has 11255 Blast hits to 11173 proteins in 538 species: Archae - 0; Bacteria - 0; Metazoa - 8589; Fungi - 214; Plants - 2276; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISCTeggNOG:ENOG410YFS8EMBL:AB493465EnsemblPlants:AT1G17920
EnsemblPlants:AT1G17920.1entrez:838371ExpressionAtlas:C0SUW2Gene3D:1.10.10.60
Gene3D:3.30.530.20GeneID:838371GO:GO:0005634GO:GO:0006355
GO:GO:0008289GO:GO:0043565Gramene:AT1G17920.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF236InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057
InterPro:IPR017970InterPro:IPR023393KEGG:ath:AT1G17920KO:K09338
ncoils:CoilOMA:IKTTLNCPaxDb:C0SUW2Pfam:PF00046
Pfam:PF01852Pfam:Q9LMT8Pfscan:PS50071Pfscan:PS50848
PhylomeDB:C0SUW2PRIDE:C0SUW2PROSITE:PS00027PROSITE:PS50071
PROSITE:PS50848ProteinModelPortal:C0SUW2RefSeq:NP_564041.2scanprosite:PS00027
SMART:SM00234SMART:SM00389SMR:C0SUW2SUPFAM:SSF46689
SUPFAM:SSF55961TAIR:AT1G17920tair10-symbols:HDG12UniGene:At.15827
UniProt:C0SUW2UniProt:Q9LMT8
Coordinates (TAIR10) chr1:-:6162214..6165033
Molecular Weight (calculated) 76531.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.33
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)