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AT1G72670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 8 (iqd8); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 7 (TAIR:AT1G17480.1); Has 845 Blast hits to 839 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 13; Plants - 782; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8XGeggNOG:ENOG4111A9REMBL:AC010926EMBL:AK175909
EMBL:BT010652EMBL:CP002684EnsemblPlants:AT1G72670EnsemblPlants:AT1G72670.1
entrez:843599GeneID:843599Gramene:AT1G72670.1hmmpanther:PTHR32295
hmmpanther:PTHR32295:SF25HOGENOM:HOG000237605InterPro:IPR000048KEGG:ath:AT1G72670
OMA:LTHQPRTPfam:PF00612Pfscan:PS50096PhylomeDB:Q9CAI2
PIR:D96751PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_177411.1
SMART:SM00015STRING:3702.AT1G72670.1TAIR:AT1G72670tair10-symbols:iqd8
UniGene:At.35072UniProt:Q9CAI2
Coordinates (TAIR10) chr1:-:27356898..27358657
Molecular Weight (calculated) 45896.10 Da
IEP (calculated) 10.95
GRAVY (calculated) -0.85
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGSGNWIKS LITNKKNITD DQEKNIKKKW KLWRTSSEGL ISSSKGFKSR GGSYGTPSLG SDPPSFSADD SFTAAVAAVI RAPPKDFFLV KREWAATRIQ
101: AAFRAFLARQ ALRALKAVVR IQAIFRGRQV RKQADVTLRC MQALVRVQAR VRAHCNRGPS DGQELEKPSD QQKDDPAKQA EKGWCDSPGS INEVRTKLQM
201: RQEGAIKRER AMVYALTHQP RTCPSPAKAS KQGSVKKNNG SCKSSPGWNW LDRWVADRPW EGRLMEGPTN SSENARKSES SVSEHDTVQV RKNNLTTRVL
301: ARPPPMSSSA TSSESSSTSQ SPVPFSGSFL EEGGYYRKPS YMSLTQSIKA KQRRSGSSSS CSKTPFEKKQ SMSYNGDVNV RRSAGSDPLN NQWTDLYPPA
401: QVTGRHMWAK SQRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)