suba logo
AT1G72240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 65 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXMPeggNOG:ENOG41103UVEMBL:BT014862EMBL:CP002684
EnsemblPlants:AT1G72240EnsemblPlants:AT1G72240.1entrez:843556GeneID:843556
Gramene:AT1G72240.1hmmpanther:PTHR34046hmmpanther:PTHR34046:SF3KEGG:ath:AT1G72240
OMA:SDNNFSCProteomes:UP000006548RefSeq:NP_177369.2TAIR:AT1G72240
UniGene:At.35126UniProt:Q6ID11
Coordinates (TAIR10) chr1:+:27190211..27190573
Molecular Weight (calculated) 13357.60 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.86
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSKKAEEGK RSDSNSNSDN NFSCKKHTKH RQSPGICSLC LTERLSKLSL EYYDYTKKAV ETATYCGSTS TSSSSSVSSC YSSSSVSSCS SPLQYRYREK
101: KKDGKKQSFL FRLLLGSIVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)