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AT1G72220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G33565.1); Has 9784 Blast hits to 9740 proteins in 308 species: Archae - 0; Bacteria - 7; Metazoa - 2351; Fungi - 909; Plants - 4998; Viruses - 86; Other Eukaryotes - 1433 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC067754EMBL:AY052232
EMBL:AY084564EMBL:BT002303EMBL:CP002684EnsemblPlants:AT1G72220
EnsemblPlants:AT1G72220.1entrez:843554Gene3D:3.30.40.10GeneID:843554
Genevisible:Q8LFY8GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT1G72220.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF94HOGENOM:HOG000034163
InParanoid:Q8LFY8InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G72220
OMA:GSHLENDPaxDb:Q8LFY8Pfam:PF13639Pfam:Q8LFY8
Pfscan:PS50089PhylomeDB:Q8LFY8PIR:G96745PRIDE:Q8LFY8
PRO:PR:Q8LFY8PROSITE:PS50089ProteinModelPortal:Q8LFY8Proteomes:UP000006548
RefSeq:NP_177367.1SMART:SM00184SMR:Q8LFY8STRING:3702.AT1G72220.1
SUPFAM:SSF57850TAIR:AT1G72220TMHMM:TMhelixUniGene:At.26428
UniPathway:UPA00143UniProt:Q8LFY8
Coordinates (TAIR10) chr1:-:27184388..27185629
Molecular Weight (calculated) 45355.90 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.64
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MARKKHRKLF PTLASETNKT LDCSNGVCDP ICPYNCYPEP DYYTISPQLP PWSSSPQPSP CPSPSISAVY LPSQDSSSSL DAISIITITG AVLAILLTGF
101: FLVAKFFSDS VNRVNQGTYQ SDNEDNDTVM EEEFQDREQV DHPIWLIRTT GLQQSIINSI TICNYKRGDG LIERTDCPVC LNEFEEDESL RLLPKCNHAF
201: HISCIDTWLS SHTNCPLCRA GIAMISVTTP RYSGPVEVTP GGSGSHLEND GVDEEDHGEI ENRVDSDFKE SDDSDIRIEI YRFDSDGDGS ETETKERVRV
301: LKECMDPNGG DSVNSLSHTK THVESVDFPG KSCENQSEEF TRHNGEDEAS CSEENGGGSN QLRRSCDSGE LNGETTGDEG KSQSDISSST LKTNGSSSSV
401: SCFNKNKSSV FPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)