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AT1G72175.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.722
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box protein with domain of unknown function (DUF 1232)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1); Has 671 Blast hits to 671 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 504; Fungi - 36; Plants - 67; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTFSeggNOG:KOG2164EMBL:AF370357EMBL:AY059087
EMBL:AY084686EMBL:CP002684EnsemblPlants:AT1G72175EnsemblPlants:AT1G72175.1
entrez:843549Gene3D:3.30.40.10GeneID:843549GO:GO:0008270
GO:GO:0016021Gramene:AT1G72175.1hmmpanther:PTHR22894HOGENOM:HOG000006373
InterPro:IPR001841InterPro:IPR010652InterPro:IPR013083InterPro:IPR017907
KEGG:ath:AT1G72175KO:K15707OMA:ATILFRQPfam:PF06803
Pfscan:PS50089PhylomeDB:Q93WJ5PROSITE:PS00518PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_565037.1scanprosite:PS00518SMART:SM00184
SMR:Q93WJ5STRING:3702.AT1G72175.1SUPFAM:SSF57850TAIR:AT1G72175
TMHMM:TMhelixUniGene:At.19073UniProt:Q93WJ5
Coordinates (TAIR10) chr1:+:27157978..27159359
Molecular Weight (calculated) 20920.90 Da
IEP (calculated) 8.11
GRAVY (calculated) 0.27
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)