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AT1G69935.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : short hypocotyl in white light1
Curator
Summary (TAIR10)
Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.
Computational
Description (TAIR10)
SHORT HYPOCOTYL IN WHITE LIGHT1 (SHW1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33780.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1U3eggNOG:ENOG4111EEGEMBL:CP002684EnsemblPlants:AT1G69935
EnsemblPlants:AT1G69935.1entrez:843330GeneID:843330GO:GO:0005634
GO:GO:0010100GO:GO:0016021Gramene:AT1G69935.1hmmpanther:PTHR35474
hmmpanther:PTHR35474:SF2InParanoid:F4I3V6iPTMnet:F4I3V6KEGG:ath:AT1G69935
OMA:FLEVICNPaxDb:F4I3V6PRIDE:F4I3V6ProteinModelPortal:F4I3V6
Proteomes:UP000006548RefSeq:NP_564981.1STRING:3702.AT1G69935.1TAIR:AT1G69935
tair10-symbols:SHW1TMHMM:TMhelixUniGene:At.35361UniProt:F4I3V6
Coordinates (TAIR10) chr1:-:26342072..26343082
Molecular Weight (calculated) 21368.30 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.13
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATTTLSS SSSSPSLTLI NASHRFVSVT PFSSNSIFLR RRFRRLNRSL ASSSSHSRRR YESDDRFFGG GDNYDVVPDD DGFSDDDDEE DERESSVDLL
101: IRFLRSMFKK VSKRTKKASR RILPAAMSPR LVSFAVDGIL LLGSLSITRA FLEVICNLGG TVFTVILLIR LFWAAASFFQ TYGNSFGPNP VN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)