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AT1G64430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23549413 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); Has 41 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGR3eggNOG:ENOG410ZZP1EMBL:AY065419EMBL:AY142664
EMBL:CP002684EnsemblPlants:AT1G64430EnsemblPlants:AT1G64430.1EnsemblPlants:AT1G64430.2
entrez:842751GeneID:842751Gramene:AT1G64430.1Gramene:AT1G64430.2
hmmpanther:PTHR37381hmmpanther:PTHR37381:SF1HOGENOM:HOG000084535InterPro:IPR002885
KEGG:ath:AT1G64430ncoils:CoilOMA:YREMGPLPfscan:PS51375
PhylomeDB:Q8VYZ8PROSITE:PS51375Proteomes:UP000006548RefSeq:NP_001031231.1
RefSeq:NP_176624.2SMR:Q8VYZ8TAIR:AT1G64430UniGene:At.28627
UniProt:Q8VYZ8
Coordinates (TAIR10) chr1:+:23933541..23936336
Molecular Weight (calculated) 61624.90 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.11
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLRVVSSVF SGINRIPNLH ETHTLLRSHV FSFFFKPANI GSIRRLVLSP SYGDRSRDSV GSAADVSSSI LDDELLSSVS AVRDADEALA MISDRFGSNR
101: GGIVELEDCR SIISAAVSRG NVDLALSIFY TMRASFDLGG SDNDRWSWSR PDVEVYTMLV NGLAASLRVS DSLRIIRDIC RVGISPAEEV PFGKIVRCPS
201: CLIAIAVAQP QHGVQIVSCA NCRYQYELFS GDITSIDSEE LGKDIPLWEK GLRLIQIKKN KITSSVHSIV VQTPSGTART HRFATETAEL PAQEGERVTI
301: ASAAPSNVYR QVGPFKFISK APNFYPGEPM SLTKHKDGRE SILLRPPSKD GDKILQPSFL IPLLAILATG DAASGVIDPS LPQLLSVATV TSLAIGATVN
401: SFVLPKLNQL PERTVDVVGI KQQLLSQYDV LQRRIRDLKE AVEKEVWMLA RMCQLENKIL AVGEPAYRTR RTRVKKVRES LENSIKGKID LIDSYARISS
501: MIEIEVEMDS DVLAAEAVNN TENIAQQIEQ IMELENLEEK WKIQAEANDE AERLLSSQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)