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AT1G68310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF59)
Curator
Summary (TAIR10)
Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.
Computational
Description (TAIR10)
Protein of unknown function (DUF59); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF59) (TAIR:AT3G50845.1); Has 558 Blast hits to 558 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 136; Plants - 85; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5133eggNOG:KOG3381EMBL:AC016447EMBL:AK228380
EMBL:AK319096EMBL:BT005787EMBL:BT006073EMBL:CP002684
EnsemblPlants:AT1G68310EnsemblPlants:AT1G68310.1EnsemblPlants:AT1G68310.2entrez:843160
ExpressionAtlas:Q9C9G6GeneID:843160GO:GO:0005634GO:GO:0005737
GO:GO:0007059hmmpanther:PTHR12377HOGENOM:HOG000157065InParanoid:Q9C9G6
InterPro:IPR002744iPTMnet:Q9C9G6KEGG:ath:AT1G68310OMA:VDDENSY
PaxDb:Q9C9G6Pfam:PF01883PhylomeDB:Q9C9G6PIR:G96706
PRIDE:Q9C9G6PRO:PR:Q9C9G6ProteinModelPortal:Q9C9G6Proteomes:UP000006548
RefSeq:NP_001154457.1RefSeq:NP_176998.1SMR:Q9C9G6STRING:3702.AT1G68310.1
SUPFAM:SSF117916TAIR:AT1G68310tair10-symbols:AE7UniGene:At.35543
UniProt:F4HX83
Coordinates (TAIR10) chr1:+:25599812..25601239
Molecular Weight (calculated) 17916.20 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.40
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSGLINENP IIYPKKERRL RTDTSITDEL TPEPIDQLEI FDILSSSNIK DPEHPNTLED LRVVTEDSVE VDDENSYVRV TFTPTVEHCS MATVIGLCVR
101: VKLLRSLPSR YKIDIRVAPG SHATEDALNK QLNDKERVAA ALENPNLVEM VDECLPSEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)