suba logo
AT1G67820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1); Has 6733 Blast hits to 6560 proteins in 362 species: Archae - 6; Bacteria - 120; Metazoa - 1758; Fungi - 815; Plants - 2713; Viruses - 9; Other Eukaryotes - 1312 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0631eggNOG:KOG0698EMBL:JF332032EnsemblPlants:AT1G67820
EnsemblPlants:AT1G67820.1entrez:843108ExpressionAtlas:F6LPR4Gene3D:3.60.40.10
GeneID:843108GO:GO:0004722GO:GO:0046872Gramene:AT1G67820.1
hmmpanther:PTHR13832hmmpanther:PTHR13832:SF282InterPro:IPR000222InterPro:IPR001932
InterPro:IPR015655iPTMnet:F6LPR4KEGG:ath:AT1G67820OMA:DMEFLVL
PANTHER:PTHR13832PaxDb:F6LPR4Pfam:PF00481Pfam:Q9FXE4
Pfscan:PS51746PhylomeDB:F6LPR4PRIDE:F6LPR4PROSITE:PS01032
PROSITE:PS51746ProteinModelPortal:F6LPR4RefSeq:NP_176948.2scanprosite:PS01032
SMART:SM00332SMR:F6LPR4STRING:3702.AT1G67820.1SUPFAM:SSF81606
TAIR:AT1G67820UniGene:At.23529UniGene:At.35596UniProt:F6LPR4
UniProt:Q9FXE4
Coordinates (TAIR10) chr1:+:25429882..25431484
Molecular Weight (calculated) 49355.70 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.45
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNKLRSEET ITSLSSFMAS TLSIASPSPC SIPLSVTKVS PLKRKRPTHL NIPDLNPQQP ISTDYFRFRE GDAKVSPLKR KRPAHLNIPD LNPQQPIRTD
101: YFSFTDFAHQ NGTVSFGGNG FGVVSRNGKK KFMEDTHRIV PCLVGNSKKS FFGVYDGHGG AKAAEFVAEN LHKYVVEMME NCKGKEEKVE AFKAAFLRTD
201: RDFLEKGVVS GACCVTAVIQ DQEMIVSNLG DCRAVLCRAG VAEALTDDHK PGRDDEKERI ESQGGYVDNH QGAWRVQGIL AVSRSIGDAH LKKWVVAEPE
301: TRVLELEQDM EFLVLASDGL WDVVSNQEAV YTVLHVLAQR KTPKESEEEN LVQGFVNMSP SSKLRRASLV KSPRCAKSQS YYYNSENESP SLNREIGSSP
401: SKSPITPWKS LWAKAACKEL ANLAAKRGSM DDITVVIIDL NHYKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)