suba logo
AT1G64090.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.591
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Reticulan like protein B3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulan like protein B3 (RTNLB3); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1).
Protein Annotations
eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:CP002684EnsemblPlants:AT1G64090
EnsemblPlants:AT1G64090.2entrez:842713ExpressionAtlas:F4I596GeneID:842713
GO:GO:0005789GO:GO:0016021Gramene:AT1G64090.2hmmpanther:PTHR10994
hmmpanther:PTHR10994:SF70InterPro:IPR003388KEGG:ath:AT1G64090OMA:KVMSKIP
PaxDb:F4I596Pfam:PF02453Pfscan:PS50845PRIDE:F4I596
PROSITE:PS50845ProteinModelPortal:F4I596Proteomes:UP000006548RefSeq:NP_001185307.1
SMR:F4I596STRING:3702.AT1G64090.2TAIR:AT1G64090tair10-symbols:RTNLB3
TMHMM:TMhelixUniGene:At.27443UniProt:F4I596
Coordinates (TAIR10) chr1:+:23789395..23790669
Molecular Weight (calculated) 30530.10 Da
IEP (calculated) 7.87
GRAVY (calculated) 0.01
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKHSENQDI NERFGLVFAA ADIFLWRNKK VSGGVLGAAT
101: VSWILFELLE YNLLTLFGHI SILALAVLFL WSSASTFIHK SPLHIPEVHI PEDVVLQLAS GLRIEINRGF TVLRDIASGR DLKKFLLVIA GLWVLSKVGS
201: SCNFLTLIYI ATVLLFTIPV LYEKYEDKVD DFGEKAMREI KKQYVEFDVK VLSKVMSKIP KGAFAFIKKK D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)