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AT1G62370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 610 Blast hits to 610 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 27; Plants - 270; Viruses - 11; Other Eukaryotes - 83 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2K8eggNOG:ENOG410Y2MJEMBL:AC003113EMBL:CP002684
EnsemblPlants:AT1G62370EnsemblPlants:AT1G62370.1entrez:842535Gene3D:3.30.40.10
GeneID:842535GO:GO:0008270Gramene:AT1G62370.1hmmpanther:PTHR12183
HOGENOM:HOG000015147InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G62370
OMA:CSREIWMPfam:PF13920Pfscan:PS50089PhylomeDB:O48801
PIR:T01447PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_176427.1
SMART:SM00184SMR:O48801STRING:3702.AT1G62370.1SUPFAM:SSF57850
TAIR:AT1G62370UniGene:At.50659UniProt:O48801
Coordinates (TAIR10) chr1:+:23072575..23073189
Molecular Weight (calculated) 22915.10 Da
IEP (calculated) 4.28
GRAVY (calculated) -0.45
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQLGDLLRE SEDGTRSERT MMMSLLEEDQ INGGDRTMSK WTTLKQRLRF DWVGCCGKPL TLRLRQAETP IVVDDDDDEE ESQNQVVDFS DPGTGTELDC
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)