AT1G61240.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.635 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF707) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G11170.1); Has 307 Blast hits to 307 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:22582537..22585050 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49122.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEHGLPSIKS WKSLVKRRNN AQEGGKSSWK MKPVVVLMCT VLLIFWYKTT NIQYEQTEIE ETDYPFEMAK ESEPVSEKLK GLPFGIMQPK SDLELKPLWS 101: SSSLRSKSGE LTNRNLLAMP VGLKQKDNVD AVVKKFLPAN FTVILFHYDG NMDQWWDLEW SSKAIHIVAH NQTKWWFAKR FLHPDIVSIY DYVFLWDEDL 201: GVENFNPQKY LRIVKTAGLE ISQPALHPNS TEVHHRITVR SRTKIFHRRV YDSRGNMKCS NASEGPPCTG FVEGMAPVFS RSAWFCTWNL IQNDLVHGWG 301: MDMKLGYCAQ GDRSKKVGIV DSEYIFHQGI QTLGGSGYPD KKNSARSGVN RRRGSATFDS RTEIRRQSTW ELQAFKERWN QAVAEDKYWV ERSSPSRNRI 401: GNNRRLKRSS MIPSLLQRKA EETTT |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)