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AT1G57790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.936
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 543 Blast hits to 532 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:27379eggNOG:ENOG410IEWQeggNOG:ENOG410YNJFEMBL:AC079732
EMBL:AY084548EMBL:AY099566EMBL:BT008739EMBL:CP002684
EnsemblPlants:AT1G57790EnsemblPlants:AT1G57790.1entrez:842154GeneID:842154
Genevisible:Q9FVS1Gramene:AT1G57790.1hmmpanther:PTHR33127hmmpanther:PTHR33127:SF7
HOGENOM:HOG000112514InParanoid:Q9FVS1IntAct:Q9FVS1InterPro:IPR001810
InterPro:IPR011043KEGG:ath:AT1G57790OMA:RYSKDGWPaxDb:Q9FVS1
Pfam:PF00646Pfam:PF12937Pfam:Q9FVS1PhylomeDB:Q9FVS1
PIR:C96612PRIDE:Q9FVS1PRO:PR:Q9FVS1ProteinModelPortal:Q9FVS1
Proteomes:UP000006548RefSeq:NP_564725.1SMART:SM00256STRING:3702.AT1G57790.1
SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT1G57790
UniGene:At.36966UniProt:Q9FVS1
Coordinates (TAIR10) chr1:-:21404578..21405636
Molecular Weight (calculated) 40898.60 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.29
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVNTNEGSK NLWKDLPLEL LSSVMTFLEI KDNVRASVVC KSWFEAAVSV RVIDKSPWLM YFPETKNTYD FYDPSNCKKY TMELPKSLVG FIVRYSKDGW
101: LLMSQEDSSH FVLFNPFTMD VVALPFLHLF TYYQLVGFSS APTSSECVVF TIKDYDPGHV TIRTWSPGQT MWTSMQVESQ FLDVDHNNVV FSNGVFYCLN
201: QRNHVAVFDP SLRTWNVLDV PPPRCPDDKS WNEGKFMVGY KGDILVIRTY ENKDPLVFKL DLTRGIWEEK DTLGSLTIFV SRKSCESRTY VKDGMLRNSV
301: YFPELCYNEK QSVVYSFDEG RYHLREHDLD WGKQLSSDNI WIEPPKNAFE LV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)