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AT1G05780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar ATPase assembly integral membrane protein VMA21-like domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1WXeggNOG:ENOG4112D64EMBL:AY954753EMBL:CP002684
EnsemblPlants:AT1G05780EnsemblPlants:AT1G05780.1entrez:837086GeneID:837086
GO:GO:0005789GO:GO:0016021GO:GO:0030127GO:GO:0033116
GO:GO:0070072Gramene:AT1G05780.1HAMAP:MF_03058hmmpanther:PTHR31792
HOGENOM:HOG000030849InterPro:IPR019013KEGG:ath:AT1G05780OMA:IVFYICM
PANTHER:PTHR31792Pfam:PF09446PhylomeDB:Q58G56Proteomes:UP000006548
RefSeq:NP_172069.1STRING:3702.AT1G05780.1TAIR:AT1G05780TMHMM:TMhelix
UniGene:At.49859UniProt:Q58G56
Coordinates (TAIR10) chr1:+:1726761..1728180
Molecular Weight (calculated) 11547.30 Da
IEP (calculated) 8.51
GRAVY (calculated) 0.39
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVMHKFLI ASMFMWILPV AILYGFNHNL LPGSTTLSPH SLILLSGFLA VVSVNTVIVF YICMAMKEPA DKHKPDAAFL AEAKDSVNKL TKGATSSDDH
101: ALKKQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)