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AT3G60980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: glutamine-rich protein 23 (TAIR:AT1G10270.1); Has 2028 Blast hits to 1422 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2019; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL358732EMBL:AY081333
EMBL:BT002139EMBL:CP002686EnsemblPlants:AT3G60980EnsemblPlants:AT3G60980.1
entrez:825270Gene3D:1.25.40.10GeneID:825270Genevisible:Q9LEX5
GO:GO:0005739GO:GO:0006979Gramene:AT3G60980.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF393HOGENOM:HOG000115633InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT3G60980OMA:HHSNYENPaxDb:Q9LEX5Pfam:PF01535
Pfam:PF13812Pfam:Q9LEX5Pfscan:PS51375PhylomeDB:Q9LEX5
PIR:T50519PRIDE:Q9LEX5PRO:PR:Q9LEX5PROSITE:PS51375
ProteinModelPortal:Q9LEX5Proteomes:UP000006548RefSeq:NP_191657.1STRING:3702.AT3G60980.1
SUPFAM:SSF48452SwissPalm:Q9LEX5TAIR:AT3G60980TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.27830UniGene:At.74072UniProt:Q9LEX5
Coordinates (TAIR10) chr3:-:22565440..22566678
Molecular Weight (calculated) 47370.80 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.31
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)